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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101259343   carbamoyl phosphate synthase arginine-specific large chain, chloroplastic 
 sly-r.6   101259343   carbamoyl phosphate synthase arginine-specific large chain, chloroplastic 
 ath-u.5   CARB   carbamoyl phosphate synthetase B 
 gma-u.5   100819867   carbamoyl-phosphate synthase large chain, chloroplastic 
 gma-u.5   100797877   carbamoyl-phosphate synthase large chain, chloroplastic 
 vvi-u.5   100262205   carbamoyl-phosphate synthase large chain, chloroplastic 
 ppo-u.5   7475373   carbamoyl-phosphate synthase large chain, chloroplastic 
 mtr-u.5   11418051   carbamoyl-phosphate synthase large chain, chloroplastic 
 osa-u.5   4326346   carbamoyl-phosphate synthase large chain, chloroplastic-like 
 zma-u.5   103651512   carbamoyl-phosphate synthase large chain, chloroplastic 
 zma-u.5   103636016   carbamoyl-phosphate synthase large chain, chloroplastic 

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Top 50 coexpressed genes to 101259343 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101259343 (sly-u.5 coexpression data)

CoexMap"101259343"


slyLOC101259343 | Entrez gene ID : 101259343    
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00220 [list] [network] Arginine biosynthesis (41 genes)
sly00240 [list] [network] Pyrimidine metabolism (66 genes)
sly00250 [list] [network] Alanine, aspartate and glutamate metabolism (54 genes)
sly01240 [list] [network] Biosynthesis of cofactors (247 genes)
GO BP
GO:0006541 [list] [network] glutamine metabolic process  (13 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004088 [list] [network] carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2359 genes)  IEA  
Protein XP_004241264.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 3,  nucl 1,  mito 1  (predict for XP_004241264.3)
Subcellular
localization
TargetP
mito 4,  chlo 3  (predict for XP_004241264.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101259343

.
sly-r.6
for
101259343

.
ath-u.5
for
CARB

.
gma-u.5
for
100819867

.
gma-u.5
for
100797877

.
vvi-u.5
for
100262205

.
ppo-u.5
for
7475373

.
mtr-u.5
for
11418051

.
osa-u.5
for
4326346

.
zma-u.5
for
103651512

.
zma-u.5
for
103636016

.


Ortholog ID: 8722
Species ath gma gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol CARB LOC100819867 LOC100797877 LOC101259343 LOC4326346 LOC103636016 LOC103651512 LOC103840449 LOC100262205 LOC7475373 LOC11418051 LOC123069957 LOC123078414 LOC123443736 LOC107939191 LOC107917754 LOC111212328 LOC106367373 CHLRE_08g358580v5 LOC8078204 LOC102581397 LOC102623589 LOC100839092 LOC107799561 LOC142161822
Function* carbamoyl phosphate synthetase B carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl phosphate synthase arginine-specific large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic-like carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic-like carbamoyl-phosphate synthase large chain, chloroplastic uncharacterized protein carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl-phosphate synthase large chain, chloroplastic carbamoyl phosphate synthase arginine-specific large chain, chloroplastic-like carbamoyl phosphate synthase arginine-specific large chain, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03008 Ribosome biogenesis in eukaryotes 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 10
gma00220 Arginine biosynthesis 2
gma00240 Pyrimidine metabolism 2
gma00250 Alanine, aspartate and glutamate metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma00220 Arginine biosynthesis 4
gma00250 Alanine, aspartate and glutamate metabolism 4
gma01230 Biosynthesis of amino acids 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00230 Purine metabolism 3
sly03018 RNA degradation 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 6
osa00300 Lysine biosynthesis 4
osa00970 Aminoacyl-tRNA biosynthesis 4
osa01240 Biosynthesis of cofactors 3
osa00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma00220 Arginine biosynthesis 2
zma00240 Pyrimidine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
zma00220 Arginine biosynthesis 2
zma00240 Pyrimidine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
bra01240 Biosynthesis of cofactors 3
bra00230 Purine metabolism 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 4
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00240 Pyrimidine metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo03040 Spliceosome 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr00230 Purine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 8
tae00240 Pyrimidine metabolism 7
tae01240 Biosynthesis of cofactors 7
tae00250 Alanine, aspartate and glutamate metabolism 6
tae01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 6
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
tae00240 Pyrimidine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 7
hvu00220 Arginine biosynthesis 4
hvu00250 Alanine, aspartate and glutamate metabolism 3
hvu01240 Biosynthesis of cofactors 2
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi00230 Purine metabolism 3
ghi00220 Arginine biosynthesis 2
ghi00240 Pyrimidine metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi00230 Purine metabolism 3
ghi00220 Arginine biosynthesis 2
ghi00240 Pyrimidine metabolism 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00220 Arginine biosynthesis 7
cre01230 Biosynthesis of amino acids 6
cre00250 Alanine, aspartate and glutamate metabolism 5
cre00230 Purine metabolism 3
cre00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 5
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi01240 Biosynthesis of cofactors 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00230 Purine metabolism 2
nta00053 Ascorbate and aldarate metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839868 100819867 100797877 101259343 4326346 103636016 103651512 103840449 100262205 7475373 11418051 123069957 123078414 123443736 107939191 107917754 111212328 106367373 5716305 8078204 102581397 102623589 100839092 107799561 142161822
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