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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101259697   vacuolar protein sorting-associated protein 60.1 
 sly-r.6   101259697   vacuolar protein sorting-associated protein 60.1 
 sly-m.5   101259697   vacuolar protein sorting-associated protein 60.1 
 sly-u.5   101248200   vacuolar protein sorting-associated protein 60.2 
 ath-u.5   VPS60.1   SNF7 family protein 
 ath-u.5   VPS60.2   SNF7 family protein 
 gma-u.5   100527083   SNF7 family protein 
 vvi-u.5   100240918   vacuolar protein sorting-associated protein 60.2 
 vvi-u.5   100244534   vacuolar protein sorting-associated protein 60.2 
 ppo-u.5   7490888   vacuolar protein sorting-associated protein 60.1 
 ppo-u.5   7469518   vacuolar protein sorting-associated protein 60.1 
 mtr-u.5   11418361   vacuolar protein sorting-associated protein 60.1 
 osa-u.5   4337536   vacuolar protein sorting-associated protein 60.2 
 osa-u.5   9266052   vacuolar protein sorting-associated protein 60.1 
 zma-u.5   100284928   uncharacterized LOC100284928 
 zma-u.5   100273036   uncharacterized LOC100273036 

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Top 50 coexpressed genes to 101259697 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101259697 (sly-u.5 coexpression data)

CoexMap"101259697"


slyLOC101259697 | Entrez gene ID : 101259697      
Species sly ath gma vvi ppo mtr osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 2 1 2 2 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04144 [list] [network] Endocytosis (167 genes)
GO BP
GO:0032511 [list] [network] late endosome to vacuole transport via multivesicular body sorting pathway  (26 genes)  IEA  
GO:0006900 [list] [network] vesicle budding from membrane  (44 genes)  IEA  
GO CC
GO:0005771 [list] [network] multivesicular body  (15 genes)  IEA  
GO MF
Protein XP_004249941.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 4,  nucl 1  (predict for XP_004249941.1)
Subcellular
localization
TargetP
other 7,  mito 4  (predict for XP_004249941.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101259697

.
sly-r.6
for
101259697

.
sly-m.5
for
101259697

.
sly-u.5
for
101248200

.
ath-u.5
for
VPS60.1

.
ath-u.5
for
VPS60.2

.
gma-u.5
for
100527083

.
vvi-u.5
for
100240918

.
vvi-u.5
for
100244534

.
ppo-u.5
for
7490888

.
ppo-u.5
for
7469518

.
mtr-u.5
for
11418361

.
osa-u.5
for
4337536

.
osa-u.5
for
9266052

.
zma-u.5
for
100284928

.
zma-u.5
for
100273036

.


Ortholog ID: 3098
Species ath ath gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol VPS60.1 VPS60.2 LOC100527083 LOC101259697 LOC101248200 LOC4337536 LOC9266052 LOC100284928 LOC100273036 LOC103847254 LOC103859354 LOC100240918 LOC7490888 LOC7469518 LOC11418361 LOC123184390 LOC123442732 LOC123441976 LOC107904768 LOC107904373 LOC106358541 LOC106428238 CHLRE_13g577950v5 LOC8066585 LOC8072371 LOC102578965 LOC102585470 LOC102631392 LOC100825412 LOC100841033 LOC107793425 LOC107813782
Function* SNF7 family protein SNF7 family protein SNF7 family protein vacuolar protein sorting-associated protein 60.1 vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.1 uncharacterized LOC100284928 uncharacterized LOC100273036 vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.1 vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.1 vacuolar protein sorting-associated protein 60.1 vacuolar protein sorting-associated protein 60.1 vacuolar protein sorting-associated protein 60.1 vacuolar protein sorting-associated protein 60.1-like vacuolar protein sorting-associated protein 60.1-like vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.2 uncharacterized protein charged multivesicular body protein 5 charged multivesicular body protein 5 charged multivesicular body protein 5-like charged multivesicular body protein 5-like vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.1 vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.2 vacuolar protein sorting-associated protein 60.1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath04120 Ubiquitin mediated proteolysis 2
ath04141 Protein processing in endoplasmic reticulum 2
ath03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 5
ath04144 Endocytosis 3
ath04141 Protein processing in endoplasmic reticulum 2
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma04144 Endocytosis 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 4
osa04136 Autophagy - other 3
osa04145 Phagosome 3
osa03250 Viral life cycle - HIV-1 2
osa00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa00240 Pyrimidine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 7
zma03250 Viral life cycle - HIV-1 4
zma03272 Virion - Hepatitis viruses 4
zma04130 SNARE interactions in vesicular transport 3
zma04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 5
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
bra04145 Phagosome 4
bra04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 4
bra03250 Viral life cycle - HIV-1 2
bra03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 7
vvi00190 Oxidative phosphorylation 2
vvi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 7
ppo04626 Plant-pathogen interaction 3
ppo03272 Virion - Hepatitis viruses 3
ppo04141 Protein processing in endoplasmic reticulum 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 6
ppo03272 Virion - Hepatitis viruses 3
ppo04626 Plant-pathogen interaction 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 7
tae03250 Viral life cycle - HIV-1 3
tae03272 Virion - Hepatitis viruses 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 12
ghi03272 Virion - Hepatitis viruses 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 12
ghi03272 Virion - Hepatitis viruses 4
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 4
bna04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04144 Endocytosis 7
cre03272 Virion - Hepatitis viruses 4
cre03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
sbi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 5
sot00410 beta-Alanine metabolism 5
sot00640 Propanoate metabolism 5
sot01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit04136 Autophagy - other 2
cit03022 Basal transcription factors 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 3
bdi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 3
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 5
nta00561 Glycerolipid metabolism 2
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820233 830364 100527083 101259697 101248200 4337536 9266052 100284928 100273036 103847254 103859354 100240918 7490888 7469518 11418361 123184390 123442732 123441976 107904768 107904373 106358541 106428238 5719270 8066585 8072371 102578965 102585470 102631392 100825412 100841033 107793425 107813782
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