ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101254836	uclacyanin-3
sly-u.5	101252571	cucumber peeling cupredoxin
sly-u.5	101266215	blue copper protein
sot-r.1	102603718	uclacyanin-3-like
sot-r.1	102604557	mavicyanin-like
nta-r.1	107760156	cucumber peeling cupredoxin
nta-r.1	107760157	cucumber peeling cupredoxin-like
nta-r.1	107781258	mavicyanin-like
ath-u.5	BCB	blue-copper-binding protein
ath-u.5	AT1G22480	Cupredoxin superfamily protein
ath-u.5	UCC3	uclacyanin 3
gma-u.5	100527593	putative stellacyanin
gma-u.5	100789844	uclacyanin-3
gma-u.5	100306522	uncharacterized LOC100306522
bra-r.6	103866157	uclacyanin-2
bra-r.6	103862895	uclacyanin-3
vvi-u.5	100250809	blue copper protein
vvi-u.5	100268054	blue copper protein
vvi-u.5	100265072	uclacyanin-3
ppo-u.5	7461798	blue copper protein
ppo-u.5	7470086	cucumber peeling cupredoxin
ppo-u.5	7470088	umecyanin
mtr-u.5	25500067	mavicyanin
ghi-r.1	107942465	uncharacterized LOC107942465
ghi-r.1	107942687	stellacyanin
bna-r.1	106395427	uclacyanin-3-like
bna-r.1	106415653	uclacyanin-3-like
cit-r.1	102618126	blue copper protein
osa-u.5	9266186	mavicyanin
osa-u.5	4330178	blue copper protein
osa-u.5	4330790	blue copper protein
zma-u.5	100191824	blue copper protein
zma-u.5	100382230	Cupredoxin superfamily protein
zma-u.5	100283414	uncharacterized LOC100283414
tae-r.2	123154144	blue copper protein
tae-r.2	123107185	mavicyanin
hvu-r.1	123402589	blue copper protein-like
hvu-r.1	123402699	blue copper protein-like
hvu-r.1	123409270	blue copper protein-like
sbi-r.1	8074746	blue copper protein
sbi-r.1	110436893	basic blue protein-like
bdi-r.1	100830982	blue copper protein
bdi-r.1	100842239	mavicyanin
cre-r.1	CHLRE_02g111900v5	uncharacterized protein

Top 50 coexpressed genes to 101254836 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101254836 (sly-u.5 coexpression data)

CoexMap"101260771"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005886 [list] [network] plasma membrane

(899 genes)

IEA

GO MF

GO:0009055 [list] [network] electron transfer activity

(77 genes)

IEA

Protein

XP_004248538.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 9, vacu 1, E.R. 1, E.R._vacu 1

(predict for XP_004248538.1)

Subcellular
localization
TargetP

scret 8

(predict for XP_004248538.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101254836	sly-u.5 for 101252571	sly-u.5 for 101266215	sot-r.1 for 102603718	sot-r.1 for 102604557	nta-r.1 for 107760156	nta-r.1 for 107760157	nta-r.1 for 107781258	ath-u.5 for BCB	ath-u.5 for AT1G22480	ath-u.5 for UCC3	gma-u.5 for 100527593	gma-u.5 for 100789844	gma-u.5 for 100306522	bra-r.6 for 103866157	bra-r.6 for 103862895	vvi-u.5 for 100250809	vvi-u.5 for 100268054	vvi-u.5 for 100265072	ppo-u.5 for 7461798	ppo-u.5 for 7470086	ppo-u.5 for 7470088	mtr-u.5 for 25500067	ghi-r.1 for 107942465	ghi-r.1 for 107942687	bna-r.1 for 106395427	bna-r.1 for 106415653	cit-r.1 for 102618126	osa-u.5 for 9266186	osa-u.5 for 4330178	osa-u.5 for 4330790	zma-u.5 for 100191824	zma-u.5 for 100382230	zma-u.5 for 100283414	tae-r.2 for 123154144	tae-r.2 for 123107185	hvu-r.1 for 123402589	hvu-r.1 for 123402699	hvu-r.1 for 123409270	sbi-r.1 for 8074746	sbi-r.1 for 110436893	bdi-r.1 for 100830982	bdi-r.1 for 100842239	cre-r.1 for CHLRE_02g111900v5

Ortholog

Ortholog ID: 186

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

blue copper protein

dicyanin

early nodulin-like protein 9

mavicyanin-like

cucumber peeling cupredoxin-like

mavicyanin

blue copper protein

cucumber peeling cupredoxin-like

Cupredoxin superfamily protein

uclacyanin-3

cucumber peeling cupredoxin

uclacyanin-2

mavicyanin

umecyanin

blue copper protein

uclacyanin-3

blue copper protein

cucumber peeling cupredoxin

umecyanin

blue copper protein

umecyanin

blue copper protein

uclacyanin-3-like

blue copper protein

mavicyanin

basic blue protein

blue copper protein

Cupredoxin superfamily protein

uncharacterized LOC100283414

uncharacterized LOC541713

blue copper protein

mavicyanin

blue copper protein-like

basic blue protein-like

blue copper protein

mavicyanin

blue copper protein

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00520	Amino sugar and nucleotide sugar metabolism	2
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot02010	ABC transporters	2
sot04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00040	Pentose and glucuronate interconversions	2
nta00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	4
nta00941	Flavonoid biosynthesis	4
nta00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
nta00999	Biosynthesis of various plant secondary metabolites	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	11
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	8
gma00941	Flavonoid biosynthesis	5
gma00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	2
bra00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	2
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
ppo01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	4
ghi04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	4
osa04626	Plant-pathogen interaction	3
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00052	Galactose metabolism	2
hvu00500	Starch and sucrose metabolism	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00941	Flavonoid biosynthesis	4
sbi04712	Circadian rhythm - plant	3
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00941	Flavonoid biosynthesis	4
bdi00670	One carbon pool by folate	3
bdi01230	Biosynthesis of amino acids	2
bdi01240	Biosynthesis of cofactors	2
bdi00944	Flavone and flavonol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00062	Fatty acid elongation	2
bdi04626	Plant-pathogen interaction	2
bdi00940	Phenylpropanoid biosynthesis	2
bdi00941	Flavonoid biosynthesis	2
bdi00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

101266215

543645

104648249

102604557

102600778

102600455

107814170

107788304

107825924

843555

100789844

100806172

103866157

103867918

103845697

100268054

100265072

100243780

7470086

7470088

7485466

11425589

11429653

121225221

121225219

121230337

106395427

106417681

106454792

102618126

9266186

4345860

4345861

100382230

100283414

541713

123134504

123116316

123402589

123409270

123396882

110436893

8083259

100830982

100842755

100843685

5725242

The preparation time of this page was 0.2 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	3	3	3	2	3	3	1	2	2	1	3	3	2	3	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101254836 (sly-u.5 coexpression data)

Top 50 enrichment test to 101254836 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**