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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101261392   arginine--tRNA ligase, chloroplastic/mitochondrial 
 sly-r.6   101261392   arginine--tRNA ligase, chloroplastic/mitochondrial 
 ath-u.5   emb1027   Arginyl-tRNA synthetase, class Ic 
 ath-u.5   AT1G66530   Arginyl-tRNA synthetase, class Ic 
 gma-u.5   ARGS   arginyl-tRNA synthetase 
 gma-u.5   100795626   arginine--tRNA ligase, cytoplasmic 
 gma-u.5   100796303   arginine--tRNA ligase, chloroplastic/mitochondrial 
 vvi-u.5   100261143   arginine--tRNA ligase, chloroplastic/mitochondrial 
 ppo-u.5   7460441   arginine--tRNA ligase, chloroplastic/mitochondrial 
 mtr-u.5   11415626   arginine--tRNA ligase, cytoplasmic 
 mtr-u.5   25485317   arginine--tRNA ligase, cytoplasmic 
 mtr-u.5   25496992   arginine--tRNA ligase, cytoplasmic 
 osa-u.5   4324056   arginine--tRNA ligase, cytoplasmic 
 osa-u.5   4337898   arginine--tRNA ligase, chloroplastic/mitochondrial 
 zma-u.5   100281742   arginyl-tRNA synthetase 
 zma-u.5   100273441   arginyl-tRNA synthetase 

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Top 50 coexpressed genes to 101261392 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101261392 (sly-u.5 coexpression data)

CoexMap"101261392"


slyLOC101261392 | Entrez gene ID : 101261392    
Species sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 2 2 3 1 1 3 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00970 [list] [network] Aminoacyl-tRNA biosynthesis (114 genes)
GO BP
GO:0006420 [list] [network] arginyl-tRNA aminoacylation  (2 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0004814 [list] [network] arginine-tRNA ligase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
Protein XP_004251643.1 [sequence] [blastp]
XP_010313741.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_004251643.1)
cyto 6,  pero 1,  chlo 1,  mito 1,  vacu 1,  chlo_mito 1  (predict for XP_010313741.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_004251643.1)
other 8  (predict for XP_010313741.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101261392
sly-r.6
for
101261392
ath-u.5
for
emb1027
ath-u.5
for
AT1G66530
gma-u.5
for
ARGS
gma-u.5
for
100795626
gma-u.5
for
100796303
vvi-u.5
for
100261143
ppo-u.5
for
7460441
mtr-u.5
for
11415626
mtr-u.5
for
25485317
mtr-u.5
for
25496992
osa-u.5
for
4324056
osa-u.5
for
4337898
zma-u.5
for
100281742
zma-u.5
for
100273441


Ortholog ID: 4422
Species sly sot nta nta ath ath gma gma bra bra vvi ppo mtr mtr ghi ghi bna bna cit osa osa zma zma tae tae hvu sbi bdi cre
Symbol LOC101261392 LOC102578336 LOC107806361 LOC107796381 emb1027 AT1G66530 LOC100819533 ARGS LOC103861619 LOC103866030 LOC100261143 LOC7460441 LOC25485317 LOC11415626 LOC107907181 LOC107940213 LOC106361347 LOC106411344 LOC102606949 LOC4324056 LOC4337898 LOC100273441 LOC100281742 LOC123077671 LOC123180621 LOC123426392 LOC110430625 LOC100829801 CHLRE_03g143887v5
Function* arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial-like arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial-like Arginyl-tRNA synthetase, class Ic Arginyl-tRNA synthetase, class Ic arginine--tRNA ligase, cytoplasmic arginyl-tRNA synthetase arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, cytoplasmic arginine--tRNA ligase, cytoplasmic arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial arginine--tRNA ligase, chloroplastic/mitochondrial-like arginine--tRNA ligase, cytoplasmic arginine--tRNA ligase, chloroplastic/mitochondrial arginyl-tRNA synthetase arginyl-tRNA synthetase arginine--tRNA ligase, cytoplasmic arginine--tRNA ligase, cytoplasmic arginine--tRNA ligase, cytoplasmic-like arginine--tRNA ligase, chloroplastic/mitochondrial-like arginine--tRNA ligase, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 6
sly03008 Ribosome biogenesis in eukaryotes 2
sly03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 10
ath00970 Aminoacyl-tRNA biosynthesis 5
ath00300 Lysine biosynthesis 4
ath00230 Purine metabolism 3
ath01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma03040 Spliceosome 3
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 6
bra00250 Alanine, aspartate and glutamate metabolism 4
bra01240 Biosynthesis of cofactors 4
bra00230 Purine metabolism 3
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr00010 Glycolysis / Gluconeogenesis 2
mtr01200 Carbon metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 7
zma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 4
tae03013 Nucleocytoplasmic transport 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi00564 Glycerophospholipid metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101261392 102578336 107806361 107796381 828736 842971 100819533 100194418 103861619 103866030 100261143 7460441 25485317 11415626 107907181 107940213 106361347 106411344 102606949 4324056 4337898 100273441 100281742 123077671 123180621 123426392 110430625 100829801 5721327
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