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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101249833   choline monooxygenase, chloroplastic-like 
 sot-r.1   102597733   choline monooxygenase, chloroplastic-like 
 nta-r.1   107784251   choline monooxygenase, chloroplastic 
 nta-r.1   107826106   choline monooxygenase, chloroplastic 
 ath-u.5   AT4G29890   choline monooxygenase, putative (CMO-like) 
 gma-u.5   100785909   choline monooxygenase, chloroplastic 
 bra-r.6   103861915   choline monooxygenase, chloroplastic 
 vvi-u.5   100256530   choline monooxygenase, chloroplastic 
 ppo-u.5   7485492   choline monooxygenase, chloroplastic 
 mtr-u.5   11421939   choline monooxygenase, chloroplastic 
 ghi-r.1   107931614   choline monooxygenase, chloroplastic 
 ghi-r.1   107904302   choline monooxygenase, chloroplastic 
 cit-r.1   102612047   choline monooxygenase, chloroplastic 
 osa-u.5   9272377   choline monooxygenase, chloroplastic 
 zma-u.5   778432   CMO protein 
 tae-r.2   123167890   choline monooxygenase, chloroplastic 
 tae-r.2   123160696   choline monooxygenase, chloroplastic 
 tae-r.2   123148717   choline monooxygenase, chloroplastic 
 hvu-r.1   123411537   choline monooxygenase, chloroplastic 
 sbi-r.1   8063819   choline monooxygenase, chloroplastic 
 bdi-r.1   100839185   choline monooxygenase, chloroplastic 

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Top 50 coexpressed genes to 101249833 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101249833 (sly-u.5 coexpression data)

CoexMap"101261534"


slyLOC101261534 | Entrez gene ID : 101261534      
Species sly sot nta ath gma bra vvi ppo mtr ghi cit osa zma tae hvu sbi bdi cre bna
Paralog 1 1 2 1 1 1 1 1 1 2 1 1 1 3 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00260 [list] [network] Glycine, serine and threonine metabolism (67 genes)
sly00670 [list] [network] One carbon pool by folate (40 genes)
GO BP
GO CC
GO MF
GO:0051537 [list] [network] 2 iron, 2 sulfur cluster binding  (41 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (371 genes)  IEA  
Protein XP_004243034.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_004243034.2)
Subcellular
localization
TargetP
other 3  (predict for XP_004243034.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101249833
sot-r.1
for
102597733
nta-r.1
for
107784251
nta-r.1
for
107826106
ath-u.5
for
AT4G29890
gma-u.5
for
100785909
bra-r.6
for
103861915
vvi-u.5
for
100256530
ppo-u.5
for
7485492
mtr-u.5
for
11421939
ghi-r.1
for
107931614
ghi-r.1
for
107904302
cit-r.1
for
102612047
osa-u.5
for
9272377
zma-u.5
for
778432
tae-r.2
for
123167890
tae-r.2
for
123160696
tae-r.2
for
123148717
hvu-r.1
for
123411537
sbi-r.1
for
8063819
bdi-r.1
for
100839185


Ortholog ID: 10891
Species sly sot nta nta ath gma bra vvi ppo mtr ghi ghi cit osa zma tae tae tae hvu sbi bdi
Symbol LOC101249833 LOC102597733 LOC107784251 LOC107826106 AT4G29890 LOC100785909 LOC103861915 LOC100256530 LOC7485492 LOC11421939 LOC107931614 LOC107904302 LOC102612047 LOC9272377 LOC778432 LOC123167890 LOC123160696 LOC123148717 LOC123411537 LOC8063819 LOC100839185
Function* choline monooxygenase, chloroplastic-like choline monooxygenase, chloroplastic-like choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, putative (CMO-like) choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic CMO protein choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic choline monooxygenase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 2
nta00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 2
nta00670 One carbon pool by folate 2
nta00531 Glycosaminoglycan degradation 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 3
ghi00670 One carbon pool by folate 3
ghi04136 Autophagy - other 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 3
ghi00670 One carbon pool by folate 3
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 5
tae00260 Glycine, serine and threonine metabolism 3
tae00670 One carbon pool by folate 3
tae00520 Amino sugar and nucleotide sugar metabolism 2
tae01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 5
tae00260 Glycine, serine and threonine metabolism 3
tae00670 One carbon pool by folate 3
tae04517 IgSF CAM signaling 3
tae04518 Integrin signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 4
tae00260 Glycine, serine and threonine metabolism 3
tae00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00280 Valine, leucine and isoleucine degradation 4
bdi00640 Propanoate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101249833 102597733 107784251 107826106 829111 100785909 103861915 100256530 7485492 11421939 107931614 107904302 102612047 9272377 778432 123167890 123160696 123148717 123411537 8063819 100839185
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