ATTED-II : GeneCoexpression result

Species	Gene	Description
sly-u.5	101261996	uncharacterized LOC101261996
sly-r.6	101261996	uncharacterized LOC101261996
sot-r.1	102592223	bromodomain-containing protein DDB_G0280777
nta-r.1	107804691	uncharacterized LOC107804691
nta-r.1	107813252	uncharacterized LOC107813252
ath-u.5	AT3G03460	mediator of RNA polymerase II transcription subunit-like protein
ath-u.5	AT5G17510	mediator of RNA polymerase II transcription subunit-like protein
gma-u.5	100813084	probable E3 ubiquitin-protein ligase bre1
gma-u.5	100793492	probable E3 ubiquitin-protein ligase bre1
bra-r.6	103833180	putative mediator of RNA polymerase II transcription subunit 26
bra-r.6	103844231	putative mediator of RNA polymerase II transcription subunit 12
vvi-u.5	100249418	uncharacterized LOC100249418
ppo-u.5	7465623	uncharacterized LOC7465623
ppo-u.5	7459201	uncharacterized LOC7459201
mtr-u.5	25479439	transcription factor SPT20 homolog
ghi-r.1	121225141	PH domain-containing protein DDB_G0275795
ghi-r.1	121215351	putative mediator of RNA polymerase II transcription subunit 12
ghi-r.1	107950658	putative mediator of RNA polymerase II transcription subunit 26
bna-r.1	106387733	myb-like protein P
bna-r.1	125606986	putative mediator of RNA polymerase II transcription subunit 12
bna-r.1	106426201	putative uncharacterized protein DDB_G0271606
cit-r.1	102611901	uncharacterized LOC102611901
zma-u.5	103646558	uncharacterized LOC103646558
zma-u.5	100278828	uncharacterized LOC100278828
tae-r.2	123110924	uncharacterized LOC123110924
tae-r.2	123119917	uncharacterized LOC123119917
hvu-r.1	123452164	cell division protein FtsZ 1
sbi-r.1	8063240	transcription factor SPT20 homolog
bdi-r.1	100827606	general transcriptional corepressor CYC8
cre-r.1	CHLRE_17g715100v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0045893 [list] [network] positive regulation of DNA-templated transcription

(243 genes)

IEA

GO CC

GO:0016514 [list] [network] SWI/SNF complex

(6 genes)

IEA

GO MF

Protein

XP_004235329.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, chlo 1, mito 1, extr 1, chlo_mito 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_004235329.1)

Subcellular
localization
TargetP

mito 6, other 4

(predict for XP_004235329.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101261996	sly-r.6 for 101261996	sot-r.1 for 102592223	nta-r.1 for 107804691	nta-r.1 for 107813252	ath-u.5 for AT3G03460	ath-u.5 for AT5G17510	gma-u.5 for 100813084	gma-u.5 for 100793492	bra-r.6 for 103833180	bra-r.6 for 103844231	vvi-u.5 for 100249418	ppo-u.5 for 7465623	ppo-u.5 for 7459201	mtr-u.5 for 25479439	ghi-r.1 for 121225141	ghi-r.1 for 121215351	ghi-r.1 for 107950658	bna-r.1 for 106387733	bna-r.1 for 125606986	bna-r.1 for 106426201	cit-r.1 for 102611901	zma-u.5 for 103646558	zma-u.5 for 100278828	tae-r.2 for 123110924	tae-r.2 for 123119917	hvu-r.1 for 123452164	sbi-r.1 for 8063240	bdi-r.1 for 100827606	cre-r.1 for CHLRE_17g715100v5

Ortholog

Ortholog ID: 3929

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC101261996

bromodomain-containing protein DDB_G0280777

uncharacterized LOC107804691

uncharacterized LOC107813252

mediator of RNA polymerase II transcription subunit-like protein

probable E3 ubiquitin-protein ligase bre1

putative mediator of RNA polymerase II transcription subunit 26

putative mediator of RNA polymerase II transcription subunit 12

uncharacterized LOC100249418

uncharacterized LOC7465623

uncharacterized LOC7459201

transcription factor SPT20 homolog

putative mediator of RNA polymerase II transcription subunit 12

putative mediator of RNA polymerase II transcription subunit 26

mastermind-like protein 2

myb-like protein P

putative mediator of RNA polymerase II transcription subunit 12

putative uncharacterized protein DDB_G0271606

uncharacterized LOC102611901

uncharacterized LOC103646558

uncharacterized LOC100278828

uncharacterized LOC100276166

uncharacterized LOC123110924

uncharacterized LOC123102753

cell division protein FtsZ 1

transcription factor SPT20 homolog

general transcriptional corepressor CYC8

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03013	Nucleocytoplasmic transport	3
bra03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00941	Flavonoid biosynthesis	8
bra04712	Circadian rhythm - plant	3
bra00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03410	Base excision repair	4
ghi03030	DNA replication	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2
zma04120	Ubiquitin mediated proteolysis	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	7
tae04820	Cytoskeleton in muscle cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03015	mRNA surveillance pathway	2
hvu04120	Ubiquitin mediated proteolysis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	5
sbi00020	Citrate cycle (TCA cycle)	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	5
bdi04144	Endocytosis	3
bdi03040	Spliceosome	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	5

Expression

Expression pattern

Entrez Gene ID^*

101261996

102592223

107804691

107813252

821252

831617

100813084

100793492

103833180

103844231

100249418

7465623

7459201

25479439

121215351

107950658

107919987

106387733

125606986

106426201

102611901

103646558

100278828

100276166

123110924

123102753

123452164

8063240

100827606

5725995

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 101261996 (sly-u.5 coexpression data)

Top 50 enrichment test to 101261996 (sly-u.5 coexpression data)


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	zma	tae	hvu	sbi	bdi	cre	osa
Paralog	2	1	2	2	2	2	1	2	1	3	3	1	2	2	1	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101261996 (sly-u.5 coexpression data)

Top 50 enrichment test to 101261996 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**