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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101263122   zinc finger CCCH domain-containing protein 56 
 sly-r.6   101263122   zinc finger CCCH domain-containing protein 56 
 sly-u.5   101249238   zinc finger CCCH domain-containing protein 39-like 
 ath-u.5   AT2G35430   Zinc finger C-x8-C-x5-C-x3-H type family protein 
 ath-u.5   AT3G19360   Zinc finger (CCCH-type) family protein 
 ath-u.5   AT1G32360   Zinc finger (CCCH-type) family protein 
 gma-u.5   100788208   zinc finger CCCH domain-containing protein 12 
 gma-u.5   100780649   zinc finger CCCH domain-containing protein 39 
 vvi-u.5   104880257   zinc finger CCCH domain-containing protein 39 
 vvi-u.5   100262704   zinc finger CCCH domain-containing protein 12 
 vvi-u.5   100247398   zinc finger CCCH domain-containing protein 39 
 ppo-u.5   7491864   zinc finger CCCH domain-containing protein 12 
 ppo-u.5   18094153   zinc finger CCCH domain-containing protein 12 
 ppo-u.5   7477872   zinc finger CCCH domain-containing protein 39 
 osa-u.5   4344715   zinc finger CCCH domain-containing protein 56 
 zma-u.5   100193200   uncharacterized LOC100193200 

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Top 50 coexpressed genes to 101263122 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101263122 (sly-u.5 coexpression data)

CoexMap"101263122"


slyLOC101263122 | Entrez gene ID : 101263122      
Species sly ath gma vvi ppo osa zma bdi mtr bra hvu cit bna sbi ghi sot nta cre tae
Paralog 3 3 2 3 3 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (315 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2359 genes)  IEA  
Protein XP_004241444.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_004241444.1)
Subcellular
localization
TargetP
other 9  (predict for XP_004241444.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101263122
sly-r.6
for
101263122
sly-u.5
for
101249238
ath-u.5
for
AT2G35430
ath-u.5
for
AT3G19360
ath-u.5
for
AT1G32360
gma-u.5
for
100788208
gma-u.5
for
100780649
vvi-u.5
for
104880257
vvi-u.5
for
100262704
vvi-u.5
for
100247398
ppo-u.5
for
7491864
ppo-u.5
for
18094153
ppo-u.5
for
7477872
osa-u.5
for
4344715
zma-u.5
for
100193200


Ortholog ID: 1695
Species sly nta nta ath ath gma bra bra vvi vvi ppo ppo ghi ghi bna bna cit cit osa zma tae tae hvu sbi bdi bdi cre
Symbol LOC101263122 LOC107783171 LOC107804698 AT2G35430 AT1G32360 LOC100780649 LOC103859808 LOC103837309 LOC100262704 LOC100247398 LOC7472142 LOC7491864 LOC107946756 LOC107953711 LOC106374659 LOC106379792 LOC102626224 LOC102619881 LOC4344715 LOC100193200 LOC123157300 LOC123165620 LOC123408711 LOC8080851 LOC100834329 LOC100835128 CHLRE_11g476200v5
Function* zinc finger CCCH domain-containing protein 56 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 12 Zinc finger C-x8-C-x5-C-x3-H type family protein Zinc finger (CCCH-type) family protein zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 12 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 12 zinc finger CCCH domain-containing protein 12 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 12 zinc finger CCCH domain-containing protein 39 zinc finger CCCH domain-containing protein 56 uncharacterized LOC100193200 zinc finger CCCH domain-containing protein 56 zinc finger CCCH domain-containing protein 56 zinc finger CCCH domain-containing protein 56 zinc finger CCCH domain-containing protein 56 zinc finger CCCH domain-containing protein 56 zinc finger CCCH domain-containing protein 56 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03015 mRNA surveillance pathway 4
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04070 Phosphatidylinositol signaling system 3
nta03015 mRNA surveillance pathway 2
nta04382 Cornified envelope formation 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03008 Ribosome biogenesis in eukaryotes 3
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 4
vvi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi04626 Plant-pathogen interaction 2
ghi03060 Protein export 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 10
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101263122 107783171 107804698 818109 840128 100780649 103859808 103837309 100262704 100247398 7472142 7491864 107946756 107953711 106374659 106379792 102626224 102619881 4344715 100193200 123157300 123165620 123408711 8080851 100834329 100835128 66055317
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