Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101263303   pentatricopeptide repeat-containing protein At5g24830 
 sly-r.6   101263303   pentatricopeptide repeat-containing protein At5g24830 
 ath-u.5   AT5G24830   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100786895   pentatricopeptide repeat-containing protein At5g24830 
 vvi-u.5   100853091   pentatricopeptide repeat-containing protein At5g24830 
 ppo-u.5   18107590   pentatricopeptide repeat-containing protein At5g24830 
 mtr-u.5   25481890   pentatricopeptide repeat-containing protein At5g24830 

close


Top 50 coexpressed genes to 101263303 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 101263303 (sly-u.5 coexpression data)

CoexMap"101263303"


slyLOC101263303 | Entrez gene ID : 101263303      
Species sly ath gma vvi ppo mtr sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_019068715.1 [sequence] [blastp]
XP_069151494.1 [sequence] [blastp]
XP_069151495.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  cyto_E.R. 3,  chlo 1,  nucl 1,  plas 1,  vacu 1,  cysk 1,  golg 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_019068715.1)
cyto 4,  cyto_E.R. 3,  chlo 1,  nucl 1,  plas 1,  vacu 1,  cysk 1,  golg 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_069151494.1)
cyto 4,  cyto_E.R. 3,  chlo 1,  nucl 1,  plas 1,  vacu 1,  cysk 1,  golg 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1,  golg_plas 1,  cysk_plas 1  (predict for XP_069151495.1)
Subcellular
localization
TargetP
other 6  (predict for XP_019068715.1)
other 6  (predict for XP_069151494.1)
other 6  (predict for XP_069151495.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101263303

.
sly-r.6
for
101263303

.
ath-u.5
for
AT5G24830

.
gma-u.5
for
100786895

.
vvi-u.5
for
100853091

.
ppo-u.5
for
18107590

.
mtr-u.5
for
25481890

.


Ortholog ID: 14049
Species ath gma sly bra vvi ppo mtr bna bna sot cit nta nta
Symbol AT5G24830 LOC100786895 LOC101263303 LOC103874348 LOC100853091 LOC18107590 LOC25481890 LOC106380819 LOC106348496 LOC102587223 LOC102615245 LOC107818250 LOC107809569
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At5g24830 pentatricopeptide repeat-containing protein At5g24830 pentatricopeptide repeat-containing protein At5g24830 pentatricopeptide repeat-containing protein At5g24830 pentatricopeptide repeat-containing protein At5g24830 pentatricopeptide repeat-containing protein At5g24830 pentatricopeptide repeat-containing protein At5g24830 pentatricopeptide repeat-containing protein At5g24830-like pentatricopeptide repeat-containing protein At5g24830 pentatricopeptide repeat-containing protein At5g24830 uncharacterized LOC107818250 uncharacterized LOC107809569
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 5
mtr00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 2
nta03250 Viral life cycle - HIV-1 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832552 100786895 101263303 103874348 100853091 18107590 25481890 106380819 106348496 102587223 102615245 107818250 107809569
The preparation time of this page was 0.1 [sec].