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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   VPE3   vacuolar processing enzyme VPE3 
 sly-r.6   VPE3   vacuolar processing enzyme VPE3 
 sly-m.5   VPE3   vacuolar processing enzyme VPE3 
 sly-u.5   VPE1   vacuolar processing enzyme VPE1 
 sly-u.5   VPE2   vacuolar processing enzyme VPE2 
 sly-u.5   VPE4   vacuolar processing enzyme VPE4 
 ath-u.5   BETA-VPE   beta vacuolar processing enzyme 
 ath-u.5   GAMMA-VPE   gamma vacuolar processing enzyme 
 ath-u.5   ALPHA-VPE   alpha-vacuolar processing enzyme 
 gma-u.5   100791675   vacuolar-processing enzyme 
 gma-u.5   VPE   vacuolar-processing enzyme 
 gma-u.5   VPE2   vacuolar processing enzyme 2 
 vvi-u.5   100244137   vacuolar-processing enzyme 
 vvi-u.5   100251259   vacuolar-processing enzyme 
 vvi-u.5   100260773   vacuolar-processing enzyme 
 ppo-u.5   18094383   vacuolar-processing enzyme-like 
 ppo-u.5   7462273   vacuolar-processing enzyme 
 ppo-u.5   7463725   vacuolar-processing enzyme 
 mtr-u.5   11405547   legumain 
 mtr-u.5   11439938   vacuolar-processing enzyme 
 mtr-u.5   11432331   vacuolar-processing enzyme gamma-isozyme 
 osa-u.5   4339804   vacuolar-processing enzyme 
 osa-u.5   4336523   vacuolar-processing enzyme beta-isozyme 1-like 
 zma-u.5   100286140   uncharacterized LOC100286140 
 zma-u.5   542609   senescence enhanced2b 
 zma-u.5   100192667   Vacuolar-processing enzyme gamma-isozyme 

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Top 50 coexpressed genes to VPE3 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VPE3 (sly-u.5 coexpression data)

CoexMap"101263441"


slyVPE3 | Entrez gene ID : 101263441      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04142 [list] [network] Lysosome (84 genes)
GO BP
GO:0006624 [list] [network] vacuolar protein processing  (14 genes)  IEA  
GO:0051603 [list] [network] proteolysis involved in protein catabolic process  (382 genes)  IEA  
GO CC
GO MF
GO:0004197 [list] [network] cysteine-type endopeptidase activity  (59 genes)  IEA  
Protein NP_001340698.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 5,  extr 2,  chlo 1,  E.R. 1  (predict for NP_001340698.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_001340698.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
VPE3

.
sly-r.6
for
VPE3

.
sly-m.5
for
VPE3

.
sly-u.5
for
VPE1

.
sly-u.5
for
VPE2

.
sly-u.5
for
VPE4

.
ath-u.5
for
BETA-VPE

.
ath-u.5
for
GAMMA-VPE

.
ath-u.5
for
ALPHA-VPE

.
gma-u.5
for
100791675

.
gma-u.5
for
VPE

.
gma-u.5
for
VPE2

.
vvi-u.5
for
100244137

.
vvi-u.5
for
100251259

.
vvi-u.5
for
100260773

.
ppo-u.5
for
18094383

.
ppo-u.5
for
7462273

.
ppo-u.5
for
7463725

.
mtr-u.5
for
11405547

.
mtr-u.5
for
11439938

.
mtr-u.5
for
11432331

.
osa-u.5
for
4339804

.
osa-u.5
for
4336523

.
zma-u.5
for
100286140

.
zma-u.5
for
542609

.
zma-u.5
for
100192667

.


Ortholog ID: 687
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta
Symbol BETA-VPE ALPHA-VPE LOC100788554 LOC100807010 VPE2 VPE4 LOC4324683 LOC542001 LOC542077 LOC103850260 LOC103838040 LOC100251259 LOC100260773 LOC7463725 LOC25482000 LOC11439938 LOC123046146 LOC123046148 LOC123427363 LOC107886086 LOC107901497 LOC106368548 LOC106368852 CHLRE_12g483550v5 LOC8066566 LOC8078601 LOC102583556 LOC102596720 VPE LOC127903698 LOC100835846 LOC100821265 LOC107779843
Function* beta vacuolar processing enzyme alpha-vacuolar processing enzyme vacuolar-processing enzyme vacuolar-processing enzyme vacuolar processing enzyme VPE2 vacuolar processing enzyme VPE4 vacuolar-processing enzyme legumain-like protease vacuolar processing enzyme 1 vacuolar-processing enzyme gamma-isozyme vacuolar-processing enzyme beta-isozyme vacuolar-processing enzyme vacuolar-processing enzyme vacuolar-processing enzyme vacuolar-processing enzyme vacuolar-processing enzyme vacuolar-processing enzyme beta-isozyme 1-like vacuolar-processing enzyme beta-isozyme 1 vacuolar-processing enzyme beta-isozyme 1-like vacuolar-processing enzyme-like vacuolar-processing enzyme vacuolar-processing enzyme alpha-isozyme vacuolar-processing enzyme beta-isozyme uncharacterized protein vacuolar-processing enzyme vacuolar-processing enzyme vacuolar-processing enzyme beta-isozyme vacuolar-processing enzyme-like vacuolar-processing enzyme-like vacuolar-processing enzyme-like vacuolar-processing enzyme vacuolar-processing enzyme beta-isozyme 1 vacuolar-processing enzyme
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00010 Glycolysis / Gluconeogenesis 2
ath00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03250 Viral life cycle - HIV-1 2
gma03272 Virion - Hepatitis viruses 2
gma04144 Endocytosis 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 5
zma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01200 Carbon metabolism 2
zma01210 2-Oxocarboxylic acid metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 3
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 3
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 3
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00520 Amino sugar and nucleotide sugar metabolism 4
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00071 Fatty acid degradation 2
hvu01212 Fatty acid metabolism 2
hvu04144 Endocytosis 2
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 2
ghi04981 Folate transport and metabolism 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
ghi04142 Lysosome 4
ghi00190 Oxidative phosphorylation 2
ghi04016 MAPK signaling pathway - plant 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 5
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04142 Lysosome 5
sbi00561 Glycerolipid metabolism 2
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 5
sot00020 Citrate cycle (TCA cycle) 4
sot01200 Carbon metabolism 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 7
nta04626 Plant-pathogen interaction 2
nta00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842569 817135 100788554 100807010 101265153 101245974 4324683 542001 542077 103850260 103838040 100251259 100260773 7463725 25482000 11439938 123046146 123046148 123427363 107886086 107901497 106368548 106368852 5728723 8066566 8078601 102583556 102596720 102612763 127903698 100835846 100821265 107779843
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