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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101264221   DNA-directed RNA polymerases II, IV and V subunit 9A 
 sly-r.6   101264221   DNA-directed RNA polymerases II, IV and V subunit 9A 
 sly-m.5   101264221   DNA-directed RNA polymerases II, IV and V subunit 9A 
 ath-u.5   NRPB9B   RNA polymerases M/15 Kd subunit 
 gma-u.5   100806190   DNA-directed RNA polymerases II, IV and V subunit 9A 
 gma-u.5   100802125   DNA-directed RNA polymerases II, IV and V subunit 9A 
 gma-u.5   100305979   uncharacterized LOC100305979 
 vvi-u.5   100253286   DNA-directed RNA polymerases II, IV and V subunit 9A 
 ppo-u.5   7471115   DNA-directed RNA polymerases II, IV and V subunit 9A 
 mtr-u.5   11417477   DNA-directed RNA polymerases II, IV and V subunit 9A 
 osa-u.5   4331295   DNA-directed RNA polymerases II, IV and V subunit 9B 
 osa-u.5   4352511   DNA-directed RNA polymerases II, IV and V subunit 9B 
 osa-u.5   4343902   DNA-directed RNA polymerases II, IV and V subunit 9A 
 zma-u.5   100285329   DNA-directed RNA polymerase II 14.5 kDa polypeptide 
 zma-u.5   103646824   DNA-directed RNA polymerases II, IV and V subunit 9A 

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Top 50 coexpressed genes to 101264221 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101264221 (sly-u.5 coexpression data)

CoexMap"101264221"


slyLOC101264221 | Entrez gene ID : 101264221    
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 3 1 1 1 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03020 [list] [network] RNA polymerase (45 genes)
sly03420 [list] [network] Nucleotide excision repair (70 genes)
GO BP
GO:0001193 [list] [network] maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II  (1 genes)  IEA  
GO:0006283 [list] [network] transcription-coupled nucleotide-excision repair  (4 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (25 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (217 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (18 genes)  IEA  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (6 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (1242 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4457 genes)  IEA  
Protein XP_004239877.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  chlo 2,  nucl 1,  cyto 1,  plas 1,  cysk_nucl 1,  cyto_plas 1  (predict for XP_004239877.1)
Subcellular
localization
TargetP
other 7  (predict for XP_004239877.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101264221

.
sly-r.6
for
101264221

.
sly-m.5
for
101264221

.
ath-u.5
for
NRPB9B

.
gma-u.5
for
100806190

.
gma-u.5
for
100802125

.
gma-u.5
for
100305979

.
vvi-u.5
for
100253286

.
ppo-u.5
for
7471115

.
mtr-u.5
for
11417477

.
osa-u.5
for
4331295

.
osa-u.5
for
4352511

.
osa-u.5
for
4343902

.
zma-u.5
for
100285329

.
zma-u.5
for
103646824

.


Ortholog ID: 3577
Species ath gma gma sly osa osa zma zma bra vvi ppo mtr tae hvu hvu ghi ghi bna cre sbi sbi sot cit bdi bdi nta nta
Symbol NRPB9B LOC100806190 LOC100305979 LOC101264221 LOC4331295 LOC4343902 LOC103646824 LOC100285329 LOC103849513 LOC100253286 LOC7471115 LOC11417477 LOC123100691 LOC123425308 LOC123449987 LOC107936094 LOC121232352 LOC106360661 CHLRE_12g505750v5 LOC8066366 LOC8079185 LOC102580987 LOC102623490 LOC100821357 LOC100840396 LOC107782281 LOC107799275
Function* RNA polymerases M/15 Kd subunit DNA-directed RNA polymerases II, IV and V subunit 9A uncharacterized LOC100305979 DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerase II 14.5 kDa polypeptide DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A-like DNA-directed RNA polymerases II, IV and V subunit 9A-like DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9B uncharacterized protein DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9B DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A DNA-directed RNA polymerases II, IV and V subunit 9A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
ath03040 Spliceosome 5
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 11
gma03040 Spliceosome 3
gma04144 Endocytosis 3
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
zma03018 RNA degradation 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 6
bra03040 Spliceosome 4
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 2
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr03020 RNA polymerase 4
mtr03420 Nucleotide excision repair 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00920 Sulfur metabolism 2
ghi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00920 Sulfur metabolism 2
ghi01320 Sulfur cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 5
bna03420 Nucleotide excision repair 5
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03420 Nucleotide excision repair 4
cre03020 RNA polymerase 3
cre03040 Spliceosome 3
cre04120 Ubiquitin mediated proteolysis 3
cre04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 5
sbi00010 Glycolysis / Gluconeogenesis 4
sbi00710 Carbon fixation by Calvin cycle 4
sbi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi00190 Oxidative phosphorylation 2
sbi03050 Proteasome 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot03020 RNA polymerase 3
sot03420 Nucleotide excision repair 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03018 RNA degradation 3
cit03010 Ribosome 3
cit04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi04144 Endocytosis 3
bdi03040 Spliceosome 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 4
nta03018 RNA degradation 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827321 100806190 100305979 101264221 4331295 4343902 103646824 100285329 103849513 100253286 7471115 11417477 123100691 123425308 123449987 107936094 121232352 106360661 5716471 8066366 8079185 102580987 102623490 100821357 100840396 107782281 107799275
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