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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101268191   vacuolar protein sorting-associated protein 24 homolog 1 
 sly-r.6   101268191   vacuolar protein sorting-associated protein 24 homolog 1 
 sly-u.5   101259117   vacuolar protein sorting-associated protein 24 homolog 1-like 
 ath-u.5   VPS24.1   SNF7 family protein 
 gma-u.5   100817500   vacuolar protein sorting-associated protein 24 homolog 1 
 gma-u.5   100797244   vacuolar protein sorting-associated protein 24 homolog 1-like 
 gma-u.5   100781929   vacuolar protein sorting-associated protein 24 homolog 1 
 vvi-u.5   100260253   vacuolar protein sorting-associated protein 24 homolog 1 
 ppo-u.5   7494932   vacuolar protein sorting-associated protein 24 homolog 1 
 ppo-u.5   18098242   vacuolar protein sorting-associated protein 24 homolog 1 
 mtr-u.5   25492378   vacuolar protein sorting-associated protein 24 homolog 1 
 osa-u.5   4331337   vacuolar protein sorting-associated protein 24 homolog 1 
 osa-u.5   4343227   vacuolar protein sorting-associated protein 24 homolog 1 
 zma-u.5   100273289   uncharacterized LOC100273289 
 zma-u.5   100216894   uncharacterized LOC100216894 

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Top 50 coexpressed genes to 101268191 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101268191 (sly-u.5 coexpression data)

CoexMap"101268191"


slyLOC101268191 | Entrez gene ID : 101268191    
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 3 1 2 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04144 [list] [network] Endocytosis (167 genes)
GO BP
GO:0032509 [list] [network] endosome transport via multivesicular body sorting pathway  (33 genes)  IEA  
GO:0045324 [list] [network] late endosome to vacuole transport  (36 genes)  IEA  
GO:0015031 [list] [network] protein transport  (364 genes)  IEA  
GO CC
GO:0000815 [list] [network] ESCRT III complex  (12 genes)  IEA  
GO:0005771 [list] [network] multivesicular body  (15 genes)  IEA  
GO MF
Protein XP_004241293.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  cyto_E.R. 2,  pero 1,  chlo_mito 1  (predict for XP_004241293.1)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for XP_004241293.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101268191

.
sly-r.6
for
101268191

.
sly-u.5
for
101259117

.
ath-u.5
for
VPS24.1

.
gma-u.5
for
100817500

.
gma-u.5
for
100797244

.
gma-u.5
for
100781929

.
vvi-u.5
for
100260253

.
ppo-u.5
for
7494932

.
ppo-u.5
for
18098242

.
mtr-u.5
for
25492378

.
osa-u.5
for
4331337

.
osa-u.5
for
4343227

.
zma-u.5
for
100273289

.
zma-u.5
for
100216894

.


Ortholog ID: 3812
Species ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol VPS24.1 LOC100797244 LOC100817500 LOC101259117 LOC101268191 LOC4331337 LOC4343227 LOC100216894 LOC100273289 LOC103845498 LOC103856542 LOC100260253 LOC7494932 LOC18098242 LOC25492378 LOC123099199 LOC123089755 LOC123450056 LOC107963920 LOC107915800 LOC106371625 LOC106385218 CHLRE_07g324400v5 LOC8080674 LOC8078026 LOC102591547 LOC102599161 LOC102631294 LOC102616042 LOC100832270 LOC100828971 LOC107817238 LOC107811106
Function* SNF7 family protein vacuolar protein sorting-associated protein 24 homolog 1-like vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1-like vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 uncharacterized LOC100216894 uncharacterized LOC100273289 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1-like uncharacterized protein vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1-like vacuolar protein sorting-associated protein 24 homolog 1-like vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1-like vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1 vacuolar protein sorting-associated protein 24 homolog 1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 3
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00541 Biosynthesis of various nucleotide sugars 2
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 2
osa04145 Phagosome 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04142 Lysosome 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 6
zma03250 Viral life cycle - HIV-1 3
zma03272 Virion - Hepatitis viruses 3
zma04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 6
zma04120 Ubiquitin mediated proteolysis 3
zma04141 Protein processing in endoplasmic reticulum 2
zma04144 Endocytosis 2
zma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 5
ppo03250 Viral life cycle - HIV-1 3
ppo03272 Virion - Hepatitis viruses 3
ppo04136 Autophagy - other 3
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 5
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 3
tae00750 Vitamin B6 metabolism 2
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu00240 Pyrimidine metabolism 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 2
ghi04145 Phagosome 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi04626 Plant-pathogen interaction 6
ghi04144 Endocytosis 2
ghi04016 MAPK signaling pathway - plant 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 8
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 8
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04130 SNARE interactions in vesicular transport 2
cre04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 4
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 5
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 4
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 5
nta04130 SNARE interactions in vesicular transport 3
nta03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 7
nta03250 Viral life cycle - HIV-1 2
nta03272 Virion - Hepatitis viruses 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832359 100797244 100817500 101259117 101268191 4331337 4343227 100216894 100273289 103845498 103856542 100260253 7494932 18098242 25492378 123099199 123089755 123450056 107963920 107915800 106371625 106385218 5726615 8080674 8078026 102591547 102599161 102631294 102616042 100832270 100828971 107817238 107811106
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