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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101268304   cytoplasmic tRNA 2-thiolation protein 1 
 sly-r.6   101268304   cytoplasmic tRNA 2-thiolation protein 1 
 sly-m.5   101268304   cytoplasmic tRNA 2-thiolation protein 1 
 ath-u.5   ROL5   repressor of lrx1 
 ath-u.5   AT1G76170   2-thiocytidine tRNA biosynthesis protein, TtcA 
 gma-u.5   100816096   cytoplasmic tRNA 2-thiolation protein 1-like 
 vvi-u.5   100242135   cytoplasmic tRNA 2-thiolation protein 1 
 ppo-u.5   7477123   cytoplasmic tRNA 2-thiolation protein 1 
 mtr-u.5   11420450   cytoplasmic tRNA 2-thiolation protein 1 
 osa-u.5   4330815   cytoplasmic tRNA 2-thiolation protein 1-like 
 osa-u.5   9269998   cytoplasmic tRNA 2-thiolation protein 1-like 
 zma-u.5   100193637   Cytoplasmic tRNA 2-thiolation protein 1 

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Top 50 coexpressed genes to 101268304 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101268304 (sly-u.5 coexpression data)

CoexMap"101268304"


slyLOC101268304 | Entrez gene ID : 101268304    
Species sly ath gma vvi ppo mtr osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04122 [list] [network] Sulfur relay system (11 genes)
GO BP
GO:0002143 [list] [network] tRNA wobble position uridine thiolation  (3 genes)  IEA  
GO CC
GO:0002144 [list] [network] cytosolic tRNA wobble base thiouridylase complex  (1 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (608 genes)  IEA  
GO MF
GO:0000049 [list] [network] tRNA binding  (29 genes)  IEA  
Protein XP_004246060.1 [sequence] [blastp]
XP_069144287.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  mito 3,  chlo 1,  nucl 1,  cyto_mito 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_004246060.1)
extr 6,  cyto 2,  nucl 1,  golg 1  (predict for XP_069144287.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for XP_004246060.1)
other 6,  scret 3  (predict for XP_069144287.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101268304
sly-r.6
for
101268304
sly-m.5
for
101268304
ath-u.5
for
ROL5
ath-u.5
for
AT1G76170
gma-u.5
for
100816096
vvi-u.5
for
100242135
ppo-u.5
for
7477123
mtr-u.5
for
11420450
osa-u.5
for
4330815
osa-u.5
for
9269998
zma-u.5
for
100193637


Ortholog ID: 8428
Species sly sot nta nta ath ath gma bra bra vvi ppo mtr ghi ghi bna bna cit osa osa zma tae tae hvu sbi bdi cre
Symbol LOC101268304 LOC102592937 LOC107819376 LOC107791791 ROL5 AT1G76170 LOC100816096 LOC103832066 LOC103866783 LOC100242135 LOC7477123 LOC11420450 LOC107937553 LOC107905668 LOC106390823 LOC106391227 LOC102629559 LOC4330815 LOC9269998 LOC100193637 LOC123103746 LOC123124802 LOC123397176 LOC8075190 LOC100837997 CHLRE_16g666100v5
Function* cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 repressor of lrx1 2-thiocytidine tRNA biosynthesis protein, TtcA cytoplasmic tRNA 2-thiolation protein 1-like cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1-like cytoplasmic tRNA 2-thiolation protein 1-like Cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 cytoplasmic tRNA 2-thiolation protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna00270 Cysteine and methionine metabolism 2
bna04122 Sulfur relay system 2
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna00270 Cysteine and methionine metabolism 2
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04122 Sulfur relay system 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04122 Sulfur relay system 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101268304 102592937 107819376 107791791 819035 843949 100816096 103832066 103866783 100242135 7477123 11420450 107937553 107905668 106390823 106391227 102629559 4330815 9269998 100193637 123103746 123124802 123397176 8075190 100837997 5727010
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