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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101268539   transcription factor bHLH112 
 sly-r.6   101268539   transcription factor bHLH112 
 sly-m.5   101268539   transcription factor bHLH112 
 sly-u.5   101264865   transcription factor bHLH123-like 
 sly-u.5   101263532   transcription factor bHLH123 
 sot-r.1   102581143   transcription factor bHLH123-like 
 sot-r.1   102601454   transcription factor bHLH123-like 
 nta-r.1   107785319   transcription factor bHLH112-like 
 nta-r.1   107806502   transcription factor bHLH123-like 
 nta-r.1   107808877   transcription factor bHLH112 
 ath-u.5   AT3G20640   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT1G61660   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   106795829   uncharacterized LOC106795829 
 gma-u.5   100797286   transcription factor bHLH123 
 bra-r.6   103835879   transcription factor bHLH123 
 bra-r.6   103830854   transcription factor bHLH112 
 bra-r.6   103859871   transcription factor bHLH123 
 vvi-u.5   100264251   transcription factor bHLH112 
 vvi-u.5   100267585   transcription factor bHLH123 
 ppo-u.5   18097442   transcription factor bHLH112 
 ppo-u.5   7470906   transcription factor bHLH123 
 ppo-u.5   7497032   transcription factor bHLH112 
 mtr-u.5   11407905   transcription factor bHLH123 
 mtr-u.5   11428544   transcription factor bHLH112 
 mtr-u.5   25502666   transcription factor bHLH123 
 ghi-r.1   107891798   transcription factor bHLH112 
 ghi-r.1   107903513   transcription factor bHLH123 
 bna-r.1   125596909   transcription factor bHLH123-like 
 bna-r.1   106399441   transcription factor bHLH123-like 
 bna-r.1   106386137   60S ribosomal protein L38 
 cit-r.1   102615855   transcription factor bHLH112 
 cit-r.1   102619495   transcription factor bHLH123 
 osa-u.5   4339235   transcription factor bHLH68 
 osa-u.5   4327040   transcription factor bHLH123 
 zma-u.5   100277655   uncharacterized LOC100277655 
 zma-u.5   100384230   uncharacterized LOC100384230 
 tae-r.2   123182517   transcription factor bHLH123 
 hvu-r.1   123413207   transcription factor bHLH111-like 
 hvu-r.1   123440342   uncharacterized LOC123440342 
 sbi-r.1   110433436   transcription factor bHLH112-like 
 sbi-r.1   8067473   transcription factor UNE12 
 bdi-r.1   100841119   transcription factor bHLH123 
 bdi-r.1   100822020   transcription factor bHLH123 

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Top 50 coexpressed genes to 101268539 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101268539 (sly-u.5 coexpression data)

CoexMap"101268539"


slyLOC101268539 | Entrez gene ID : 101268539      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 5 2 3 2 2 3 2 3 3 2 3 2 2 2 1 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (493 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (282 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (326 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (499 genes)  IEA  
Protein XP_004232764.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_004232764.1)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for XP_004232764.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101268539
sly-r.6
for
101268539
sly-m.5
for
101268539
sly-u.5
for
101264865
sly-u.5
for
101263532
sot-r.1
for
102581143
sot-r.1
for
102601454
nta-r.1
for
107785319
nta-r.1
for
107806502
nta-r.1
for
107808877
ath-u.5
for
AT3G20640
ath-u.5
for
AT1G61660
gma-u.5
for
106795829
gma-u.5
for
100797286
bra-r.6
for
103835879
bra-r.6
for
103830854
bra-r.6
for
103859871
vvi-u.5
for
100264251
vvi-u.5
for
100267585
ppo-u.5
for
18097442
ppo-u.5
for
7470906
ppo-u.5
for
7497032
mtr-u.5
for
11407905
mtr-u.5
for
11428544
mtr-u.5
for
25502666
ghi-r.1
for
107891798
ghi-r.1
for
107903513
bna-r.1
for
125596909
bna-r.1
for
106399441
bna-r.1
for
106386137
cit-r.1
for
102615855
cit-r.1
for
102619495
osa-u.5
for
4339235
osa-u.5
for
4327040
zma-u.5
for
100277655
zma-u.5
for
100384230
tae-r.2
for
123182517
hvu-r.1
for
123413207
hvu-r.1
for
123440342
sbi-r.1
for
110433436
sbi-r.1
for
8067473
bdi-r.1
for
100841119
bdi-r.1
for
100822020


Ortholog ID: 1346
Species sly sly sot sot nta nta nta ath ath gma gma bra bra bra vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna cit cit osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LOC101268539 LOC101263532 LOC102581143 LOC102601454 LOC107806502 LOC107810147 LOC107763722 AT3G20640 AT1G61660 LOC106795829 LOC100794682 LOC103830854 LOC103859871 LOC103869298 LOC100264251 LOC100267585 LOC18097442 LOC7470906 LOC7497032 LOC11407905 LOC11428544 LOC25502666 LOC107903513 LOC107940941 LOC107962157 LOC106376785 LOC106346043 LOC106424416 LOC102615855 LOC102619495 LOC4339235 LOC4327040 LOC100277655 LOC100384230 LOC123095450 LOC123167348 LOC123413207 LOC123440342 LOC110433436 LOC8067473 LOC100841119 LOC100822020
Function* transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH123-like transcription factor bHLH123-like transcription factor bHLH123-like transcription factor bHLH112 transcription factor bHLH112-like basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein uncharacterized LOC106795829 transcription factor bHLH112 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH123 transcription factor bHLH112 transcription factor bHLH112 transcription factor bHLH112-like transcription factor bHLH123 transcription factor bHLH123-like transcription factor bHLH112 transcription factor bHLH123 transcription factor bHLH68 transcription factor bHLH123 uncharacterized LOC100277655 uncharacterized LOC100384230 transcription factor bHLH112 transcription factor bHLH112 transcription factor bHLH111-like uncharacterized LOC123440342 transcription factor bHLH112-like transcription factor UNE12 transcription factor bHLH123 transcription factor bHLH123
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01250 Biosynthesis of nucleotide sugars 2
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00073 Cutin, suberine and wax biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma04016 MAPK signaling pathway - plant 2
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 101268539 101263532 102581143 102601454 107806502 107810147 107763722 821611 842462 106795829 100794682 103830854 103859871 103869298 100264251 100267585 18097442 7470906 7497032 11407905 11428544 25502666 107903513 107940941 107962157 106376785 106346043 106424416 102615855 102619495 4339235 4327040 100277655 100384230 123095450 123167348 123413207 123440342 110433436 8067473 100841119 100822020
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