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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102586756   spermidine synthase 1 
 sot-r.1   102587738   spermidine synthase-like 
 sly-u.5   101263807   spermidine synthase 1 
 sly-u.5   SPDSY   spermidine synthase 
 nta-r.1   107780228   spermidine synthase 1 
 nta-r.1   107765582   spermidine synthase 1 
 nta-r.1   107763093   spermidine synthase 
 ath-u.5   SPDS1   spermidine synthase 
 ath-u.5   SPDS2   spermidine synthase 2 
 gma-u.5   100776863   spermidine synthase 2 
 gma-u.5   100790506   spermidine synthase 1-like 
 bra-r.6   103835646   spermidine synthase 1 
 bra-r.6   103840733   spermidine synthase 1 
 bra-r.6   103829257   spermidine synthase 1 
 vvi-u.5   100257112   spermidine synthase-like 
 ppo-u.5   7471485   spermidine synthase 1 
 ppo-u.5   7459055   spermidine synthase 1 
 mtr-u.5   11405952   spermidine synthase 1 
 mtr-u.5   25501297   spermidine synthase 2 
 ghi-r.1   107909636   spermidine synthase 1 
 bna-r.1   106436222   spermidine synthase 1-like 
 bna-r.1   106415987   spermidine synthase 1 
 bna-r.1   106358109   spermidine synthase 1-like 
 cit-r.1   102607262   spermidine synthase 1 
 osa-u.5   4342996   spermidine synthase 1-like 
 zma-u.5   100272866   Spermidine synthase 2 
 zma-u.5   100282908   uncharacterized LOC100282908 
 tae-r.2   123165347   spermidine synthase 1 
 tae-r.2   123165222   spermidine synthase 1 
 tae-r.2   123162541   spermidine synthase 1 
 hvu-r.1   123411768   spermidine synthase 1 
 sbi-r.1   110432894   spermidine synthase 1 
 bdi-r.1   100846264   spermidine synthase 1 
 cre-r.1   CHLRE_12g558450v5   uncharacterized protein 

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Top 50 coexpressed genes to 102586756 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102586756 (sot-r.1 coexpression data)

CoexMap"102586756"


sotLOC102586756 | Entrez gene ID : 102586756      
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 2 2 3 2 2 3 1 2 2 1 3 1 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot00270 [list] [network] Cysteine and methionine metabolism (131 genes)
sot00330 [list] [network] Arginine and proline metabolism (65 genes)
sot00480 [list] [network] Glutathione metabolism (117 genes)
GO BP
GO:0008295 [list] [network] spermidine biosynthetic process  (14 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (756 genes)  IEA  
GO MF
GO:0004766 [list] [network] spermidine synthase activity  (7 genes)  IEA  
Protein XP_006340116.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 4,  nucl 3,  cyto 2,  extr 1,  nucl_plas 1  (predict for XP_006340116.1)
Subcellular
localization
TargetP
other 8  (predict for XP_006340116.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102586756
sot-r.1
for
102587738
sly-u.5
for
101263807
sly-u.5
for
SPDSY
nta-r.1
for
107780228
nta-r.1
for
107765582
nta-r.1
for
107763093
ath-u.5
for
SPDS1
ath-u.5
for
SPDS2
gma-u.5
for
100776863
gma-u.5
for
100790506
bra-r.6
for
103835646
bra-r.6
for
103840733
bra-r.6
for
103829257
vvi-u.5
for
100257112
ppo-u.5
for
7471485
ppo-u.5
for
7459055
mtr-u.5
for
11405952
mtr-u.5
for
25501297
ghi-r.1
for
107909636
bna-r.1
for
106436222
bna-r.1
for
106415987
bna-r.1
for
106358109
cit-r.1
for
102607262
osa-u.5
for
4342996
zma-u.5
for
100272866
zma-u.5
for
100282908
tae-r.2
for
123165347
tae-r.2
for
123165222
tae-r.2
for
123162541
hvu-r.1
for
123411768
sbi-r.1
for
110432894
bdi-r.1
for
100846264
cre-r.1
for
CHLRE_12g558450v5


Ortholog ID: 3168
Species sot sot sly sly nta nta nta ath ath gma gma gma bra bra bra vvi ppo ppo mtr mtr ghi ghi bna bna bna cit osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC102586756 LOC102587738 LOC101263807 SPDSY LOC107780228 LOC107765582 LOC107763093 SPDS1 SPDS2 LOC100776863 LOC100792107 LOC100812978 LOC103835646 LOC103840733 LOC103829257 LOC100257112 LOC7471485 LOC7459055 LOC11405952 LOC25501297 LOC107909636 LOC107886614 LOC106358109 LOC106358110 LOC106403388 LOC102607262 LOC4342996 LOC100272866 LOC100282908 LOC123165347 LOC123165222 LOC123157056 LOC123411768 LOC110432894 LOC100846264 CHLRE_12g558450v5
Function* spermidine synthase 1 spermidine synthase-like spermidine synthase 1 spermidine synthase spermidine synthase 1 spermidine synthase 1 spermidine synthase spermidine synthase spermidine synthase 2 spermidine synthase 2 spermidine synthase 1-like spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase-like spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 2 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1-like spermidine synthase 1-like spermidine synthase 1-like spermidine synthase 1 spermidine synthase 1-like Spermidine synthase 2 uncharacterized LOC100282908 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 spermidine synthase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 4
sot03008 Ribosome biogenesis in eukaryotes 3
sot03013 Nucleocytoplasmic transport 3
sot03250 Viral life cycle - HIV-1 3
sot00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
sot03013 Nucleocytoplasmic transport 3
sot03250 Viral life cycle - HIV-1 3
sot00270 Cysteine and methionine metabolism 2
sot00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03013 Nucleocytoplasmic transport 3
sly03250 Viral life cycle - HIV-1 3
sly03010 Ribosome 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00270 Cysteine and methionine metabolism 3
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta01240 Biosynthesis of cofactors 3
nta00270 Cysteine and methionine metabolism 2
nta00330 Arginine and proline metabolism 2
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 5
nta00020 Citrate cycle (TCA cycle) 2
nta00310 Lysine degradation 2
nta00380 Tryptophan metabolism 2
nta00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 5
nta00270 Cysteine and methionine metabolism 4
nta00480 Glutathione metabolism 3
nta00940 Phenylpropanoid biosynthesis 2
nta00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 4
ath01212 Fatty acid metabolism 3
ath00270 Cysteine and methionine metabolism 3
ath01240 Biosynthesis of cofactors 3
ath00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00480 Glutathione metabolism 3
ath00270 Cysteine and methionine metabolism 3
ath00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma00270 Cysteine and methionine metabolism 2
gma00330 Arginine and proline metabolism 2
gma00480 Glutathione metabolism 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00290 Valine, leucine and isoleucine biosynthesis 3
bra00770 Pantothenate and CoA biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03010 Ribosome 3
mtr00220 Arginine biosynthesis 2
mtr00240 Pyrimidine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 3
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 11
ghi00020 Citrate cycle (TCA cycle) 8
ghi00270 Cysteine and methionine metabolism 4
ghi01230 Biosynthesis of amino acids 4
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 11
ghi00020 Citrate cycle (TCA cycle) 8
ghi00270 Cysteine and methionine metabolism 4
ghi01230 Biosynthesis of amino acids 4
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 9
bna00330 Arginine and proline metabolism 9
bna00480 Glutathione metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 9
bna00330 Arginine and proline metabolism 9
bna00480 Glutathione metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 9
bna00330 Arginine and proline metabolism 9
bna00480 Glutathione metabolism 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 7
zma00270 Cysteine and methionine metabolism 3
zma00340 Histidine metabolism 3
zma00290 Valine, leucine and isoleucine biosynthesis 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
zma00270 Cysteine and methionine metabolism 2
zma00330 Arginine and proline metabolism 2
zma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 6
tae00330 Arginine and proline metabolism 6
tae00480 Glutathione metabolism 6
tae00240 Pyrimidine metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 6
tae00330 Arginine and proline metabolism 6
tae00480 Glutathione metabolism 6
tae00240 Pyrimidine metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 6
tae00330 Arginine and proline metabolism 6
tae00480 Glutathione metabolism 6
tae03010 Ribosome 4
tae00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 6
sbi01200 Carbon metabolism 3
sbi01210 2-Oxocarboxylic acid metabolism 3
sbi04148 Efferocytosis 2
sbi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 6
bdi01200 Carbon metabolism 6
bdi01210 2-Oxocarboxylic acid metabolism 4
bdi00010 Glycolysis / Gluconeogenesis 3
bdi00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102586756 102587738 101263807 544177 107780228 107765582 107763093 838993 843367 100776863 100792107 100812978 103835646 103840733 103829257 100257112 7471485 7459055 11405952 25501297 107909636 107886614 106358109 106358110 106403388 102607262 4342996 100272866 100282908 123165347 123165222 123157056 123411768 110432894 100846264 5728357
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