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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102588520   violaxanthin de-epoxidase, chloroplastic 
 sly-u.5   VDE   violaxanthin de-epoxidase 
 ath-u.5   NPQ1   non-photochemical quenching 1 
 gma-u.5   100816085   violaxanthin de-epoxidase, chloroplastic-like 
 gma-u.5   100778118   violaxanthin de-epoxidase, chloroplastic-like 
 vvi-u.5   100257865   violaxanthin de-epoxidase, chloroplastic 
 ppo-u.5   7474648   violaxanthin de-epoxidase, chloroplastic 
 mtr-u.5   11429816   violaxanthin de-epoxidase, chloroplastic 
 osa-u.5   4335625   violaxanthin de-epoxidase, chloroplastic 
 zma-u.5   100281366   violaxanthin de-epoxidase 

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Top 50 coexpressed genes to 102588520 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102588520 (sot-r.1 coexpression data)

CoexMap"102588520"


sotLOC102588520 | Entrez gene ID : 102588520      
Species sot sly ath gma vvi ppo mtr osa zma hvu bna cit bra ghi sbi bdi nta tae cre
Paralog 1 1 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot00906 [list] [network] Carotenoid biosynthesis (40 genes)
GO BP
GO:0010028 [list] [network] xanthophyll cycle  (3 genes)  IEA  
GO:0015994 [list] [network] chlorophyll metabolic process  (25 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (606 genes)  IEA  
GO MF
GO:0046422 [list] [network] violaxanthin de-epoxidase activity  (3 genes)  IEA  
Protein XP_006340494.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_006340494.1)
Subcellular
localization
TargetP
other 3,  chlo 3  (predict for XP_006340494.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102588520
sly-u.5
for
VDE
ath-u.5
for
NPQ1
gma-u.5
for
100816085
gma-u.5
for
100778118
vvi-u.5
for
100257865
ppo-u.5
for
7474648
mtr-u.5
for
11429816
osa-u.5
for
4335625
zma-u.5
for
100281366


Ortholog ID: 11036
Species sot sly nta nta ath gma gma bra vvi ppo mtr ghi ghi bna bna cit osa zma tae tae hvu sbi bdi
Symbol LOC102588520 VDE LOC107780507 LOC107763628 NPQ1 LOC100778118 LOC100816085 LOC103871599 LOC100257865 LOC7474648 LOC11429816 LOC107961898 LOC107892463 LOC106346323 LOC106415200 VDE LOC4335625 LOC100281366 LOC123189027 LOC123053120 LOC123426505 LOC8070802 LOC100829969
Function* violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase, chloroplastic non-photochemical quenching 1 violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00195 Photosynthesis 3
gma00710 Carbon fixation by Calvin cycle 3
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00670 One carbon pool by folate 2
ghi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 4
ghi00030 Pentose phosphate pathway 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma00900 Terpenoid backbone biosynthesis 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102588520 543696 107780507 107763628 837377 100778118 100816085 103871599 100257865 7474648 11429816 107961898 107892463 106346323 106415200 102577994 4335625 100281366 123189027 123053120 123426505 8070802 100829969
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