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Orthologous genes in OrthoFinder**

Species Gene Description
 sot-r.1   102593103   photosystem II 22 kDa protein, chloroplastic 
 sly-u.5   psbS   photosystem II subunit S 
 nta-r.1   107805098   photosystem II 22 kDa protein, chloroplastic-like 
 nta-r.1   107778533   photosystem II 22 kDa protein, chloroplastic 
 ath-u.5   NPQ4   Chlorophyll A-B binding family protein 
 gma-u.5   100807355   photosystem II 22 kDa protein, chloroplastic 
 gma-u.5   100779417   photosystem II 22 kDa protein, chloroplastic-like 
 bra-r.6   103847722   photosystem II 22 kDa protein, chloroplastic 
 vvi-u.5   100245393   photosystem II 22 kDa protein, chloroplastic 
 ppo-u.5   7463155   photosystem II 22 kDa protein, chloroplastic 
 mtr-u.5   11419130   photosystem II 22 kDa protein, chloroplastic 
 ghi-r.1   107905013   photosystem II 22 kDa protein, chloroplastic 
 ghi-r.1   107939009   photosystem II 22 kDa protein, chloroplastic 
 ghi-r.1   107923103   photosystem II 22 kDa protein, chloroplastic 
 bna-r.1   106385860   photosystem II 22 kDa protein, chloroplastic-like 
 bna-r.1   106415325   photosystem II 22 kDa protein, chloroplastic-like 
 bna-r.1   106371893   photosystem II 22 kDa protein, chloroplastic 
 cit-r.1   102630024   photosystem II 22 kDa protein, chloroplastic 
 osa-u.5   4324933   photosystem II 22 kDa protein 1, chloroplastic 
 osa-u.5   4337500   photosystem II 22 kDa protein 2, chloroplastic-like 
 zma-u.5   542126   photosystem II subunit PsbS1 
 tae-r.2   123079899   photosystem II 22 kDa protein 1, chloroplastic 
 tae-r.2   123071564   photosystem II 22 kDa protein 1, chloroplastic 
 tae-r.2   123062743   photosystem II 22 kDa protein 1, chloroplastic 
 hvu-r.1   123444787   photosystem II 22 kDa protein 1, chloroplastic 
 sbi-r.1   8062389   photosystem II 22 kDa protein, chloroplastic 
 bdi-r.1   100827756   photosystem II 22 kDa protein, chloroplastic 
 cre-r.1   CHLRE_01g016750v5   uncharacterized protein 
 cre-r.1   CHLRE_01g016600v5   uncharacterized protein 

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Top 50 coexpressed genes to 102593103 (sot-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102593103 (sot-r.1 coexpression data)

CoexMap"102593103"


sotLOC102593103 | Entrez gene ID : 102593103      
Species sot sly nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 1 1 2 1 2 1 1 1 1 3 3 1 2 1 3 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sot00195 [list] [network] Photosynthesis (86 genes)
GO BP
GO CC
GO MF
Protein XP_006363893.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 5,  plas 2,  golg 1,  cyto_plas 1  (predict for XP_006363893.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_006363893.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sot-r.1
for
102593103
sly-u.5
for
psbS
nta-r.1
for
107805098
nta-r.1
for
107778533
ath-u.5
for
NPQ4
gma-u.5
for
100807355
gma-u.5
for
100779417
bra-r.6
for
103847722
vvi-u.5
for
100245393
ppo-u.5
for
7463155
mtr-u.5
for
11419130
ghi-r.1
for
107905013
ghi-r.1
for
107939009
ghi-r.1
for
107923103
bna-r.1
for
106385860
bna-r.1
for
106415325
bna-r.1
for
106371893
cit-r.1
for
102630024
osa-u.5
for
4324933
osa-u.5
for
4337500
zma-u.5
for
542126
tae-r.2
for
123079899
tae-r.2
for
123071564
tae-r.2
for
123062743
hvu-r.1
for
123444787
sbi-r.1
for
8062389
bdi-r.1
for
100827756
cre-r.1
for
CHLRE_01g016750v5
cre-r.1
for
CHLRE_01g016600v5


Ortholog ID: 6724
Species sot sly nta nta ath gma gma bra vvi ppo mtr ghi ghi ghi bna bna bna cit osa osa zma tae tae tae hvu sbi bdi cre cre
Symbol LOC102593103 psbS LOC107805098 LOC107778533 NPQ4 LOC100807355 LOC100779417 LOC103847722 LOC100245393 LOC7463155 LOC11419130 LOC107939009 LOC107923103 LOC107921067 LOC106385860 LOC106371893 LOC106350854 LOC102630024 LOC4324933 LOC4337500 LOC542126 LOC123079899 LOC123071564 LOC123062743 LOC123444787 LOC8062389 LOC100827756 CHLRE_01g016750v5 CHLRE_01g016600v5
Function* photosystem II 22 kDa protein, chloroplastic photosystem II subunit S photosystem II 22 kDa protein, chloroplastic-like photosystem II 22 kDa protein, chloroplastic Chlorophyll A-B binding family protein photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic-like photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic-like photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic-like photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein 2, chloroplastic-like photosystem II subunit PsbS1 photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein 1, chloroplastic photosystem II 22 kDa protein, chloroplastic photosystem II 22 kDa protein, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00630 Glyoxylate and dicarboxylate metabolism 5
sot00195 Photosynthesis 4
sot00710 Carbon fixation by Calvin cycle 3
sot00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 11
sly00710 Carbon fixation by Calvin cycle 9
sly00195 Photosynthesis 5
sly00630 Glyoxylate and dicarboxylate metabolism 3
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 11
nta00710 Carbon fixation by Calvin cycle 11
nta01200 Carbon metabolism 11
nta00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 12
nta01200 Carbon metabolism 12
nta00630 Glyoxylate and dicarboxylate metabolism 11
nta00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 13
ath00710 Carbon fixation by Calvin cycle 9
ath00630 Glyoxylate and dicarboxylate metabolism 5
ath00195 Photosynthesis 3
ath00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 7
gma00710 Carbon fixation by Calvin cycle 6
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 3
gma01200 Carbon metabolism 3
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra00196 Photosynthesis - antenna proteins 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00710 Carbon fixation by Calvin cycle 3
vvi01200 Carbon metabolism 3
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 7
ppo01200 Carbon metabolism 7
ppo00195 Photosynthesis 3
ppo00010 Glycolysis / Gluconeogenesis 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr00710 Carbon fixation by Calvin cycle 4
mtr01200 Carbon metabolism 4
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 5
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 7
cit00195 Photosynthesis 5
cit00630 Glyoxylate and dicarboxylate metabolism 4
cit00710 Carbon fixation by Calvin cycle 4
cit01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 12
osa00710 Carbon fixation by Calvin cycle 10
osa00630 Glyoxylate and dicarboxylate metabolism 6
osa00195 Photosynthesis 3
osa00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 15
zma00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 10
tae01200 Carbon metabolism 10
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu00195 Photosynthesis 2
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00030 Pentose phosphate pathway 2
hvu00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 5
sbi00710 Carbon fixation by Calvin cycle 4
sbi00196 Photosynthesis - antenna proteins 2
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102593103 101260830 107805098 107778533 841033 100807355 100779417 103847722 100245393 7463155 11419130 107939009 107923103 107921067 106385860 106371893 106350854 102630024 4324933 4337500 542126 123079899 123071564 123062743 123444787 8062389 100827756 5715134 5715132
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