ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102598080	uncharacterized LOC102598080
sot-r.1	102600975	uncharacterized LOC102600975
sly-u.5	101255314	chloroplast protein FOR GROWTH AND FERTILITY 2
sly-u.5	101267456	chloroplast protein FOR GROWTH AND FERTILITY 1
nta-r.1	107778370	chloroplast protein FOR GROWTH AND FERTILITY 2-like
nta-r.1	107805334	chloroplast protein FOR GROWTH AND FERTILITY 2
nta-r.1	107788432	chloroplast protein FOR GROWTH AND FERTILITY 2
ath-u.5	AT2G16800	high-affinity nickel-transport family protein
ath-u.5	AT4G35080	high-affinity nickel-transport family protein
gma-u.5	100799220	uncharacterized LOC100799220
gma-u.5	100812030	uncharacterized LOC100812030
gma-u.5	100818218	urease accessory protein ureH-like
bra-r.6	103831976	uncharacterized LOC103831976
bra-r.6	103837785	uncharacterized LOC103837785
vvi-u.5	100250325	chloroplast protein FOR GROWTH AND FERTILITY 2
vvi-u.5	100255788	chloroplast protein FOR GROWTH AND FERTILITY 2
ppo-u.5	7472113	chloroplast protein FOR GROWTH AND FERTILITY 2
ppo-u.5	7470407	chloroplast protein FOR GROWTH AND FERTILITY 2
mtr-u.5	11445416	uncharacterized LOC11445416
ghi-r.1	107916756	uncharacterized LOC107916756
ghi-r.1	107922263	uncharacterized LOC107922263
bna-r.1	106375273	uncharacterized LOC106375273
bna-r.1	BNAC09G09160D	uncharacterized BNAC09G09160D
bna-r.1	BNAA09G08900D	uncharacterized BNAA09G08900D
cit-r.1	102625762	hypothetical protein
osa-u.5	4339930	chloroplast protein FOR GROWTH AND FERTILITY 2
osa-u.5	4331671	chloroplast protein FOR GROWTH AND FERTILITY 2
zma-u.5	100193940	high-affinity nickel-transport family protein
tae-r.2	123088279	uncharacterized LOC123088279
tae-r.2	123098460	uncharacterized LOC123098460
tae-r.2	123152454	uncharacterized LOC123152454
hvu-r.1	123408508	uncharacterized LOC123408508
hvu-r.1	123449480	uncharacterized LOC123449480
sbi-r.1	8066919	uncharacterized LOC8066919
sbi-r.1	8080534	uncharacterized LOC8080534
bdi-r.1	100839056	uncharacterized LOC100839056
bdi-r.1	100843501	uncharacterized LOC100843501
cre-r.1	CHLRE_14g629650v5	uncharacterized protein

Top 50 coexpressed genes to 102598080 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102598080 (sot-r.1 coexpression data)

CoexMap"102598080"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_006357017.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 5, E.R. 2, chlo 1, mito 1, vacu 1, pero 1, chlo_mito 1

(predict for XP_006357017.1)

Subcellular
localization
TargetP

chlo 5

(predict for XP_006357017.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102598080	sot-r.1 for 102600975	sly-u.5 for 101255314	sly-u.5 for 101267456	nta-r.1 for 107778370	nta-r.1 for 107805334	nta-r.1 for 107788432	ath-u.5 for AT2G16800	ath-u.5 for AT4G35080	gma-u.5 for 100799220	gma-u.5 for 100812030	gma-u.5 for 100818218	bra-r.6 for 103831976	bra-r.6 for 103837785	vvi-u.5 for 100250325	vvi-u.5 for 100255788	ppo-u.5 for 7472113	ppo-u.5 for 7470407	mtr-u.5 for 11445416	ghi-r.1 for 107916756	ghi-r.1 for 107922263	bna-r.1 for 106375273	bna-r.1 for BNAC09G09160D	bna-r.1 for BNAA09G08900D	cit-r.1 for 102625762	osa-u.5 for 4339930	osa-u.5 for 4331671	zma-u.5 for 100193940	tae-r.2 for 123088279	tae-r.2 for 123098460	tae-r.2 for 123152454	hvu-r.1 for 123408508	hvu-r.1 for 123449480	sbi-r.1 for 8066919	sbi-r.1 for 8080534	bdi-r.1 for 100839056	bdi-r.1 for 100843501	cre-r.1 for CHLRE_14g629650v5

Ortholog

Ortholog ID: 4037

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC102598080

uncharacterized LOC102600975

chloroplast protein FOR GROWTH AND FERTILITY 2

chloroplast protein FOR GROWTH AND FERTILITY 1

chloroplast protein FOR GROWTH AND FERTILITY 2-like

chloroplast protein FOR GROWTH AND FERTILITY 2

high-affinity nickel-transport family protein

uncharacterized LOC100799220

urease accessory protein ureH-like

uncharacterized LOC100788216

uncharacterized LOC103831976

uncharacterized LOC103837785

chloroplast protein FOR GROWTH AND FERTILITY 2

uncharacterized LOC11445416

uncharacterized LOC107916756

uncharacterized LOC107922263

uncharacterized LOC106375273

uncharacterized BNAC09G09160D

uncharacterized BNAA09G08900D

hypothetical protein

chloroplast protein FOR GROWTH AND FERTILITY 2

high-affinity nickel-transport family protein

uncharacterized LOC123098460

uncharacterized LOC123152454

uncharacterized LOC123084895

uncharacterized LOC123408508

uncharacterized LOC123449480

uncharacterized LOC8066919

uncharacterized LOC8080534

uncharacterized LOC100839056

uncharacterized LOC100843501

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot03018	RNA degradation	2
sot00941	Flavonoid biosynthesis	2
sot00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2
sot00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00710	Carbon fixation by Calvin cycle	2
sly01200	Carbon metabolism	2
sly01230	Biosynthesis of amino acids	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9
sly00190	Oxidative phosphorylation	3
sly01230	Biosynthesis of amino acids	2
sly00010	Glycolysis / Gluconeogenesis	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01230	Biosynthesis of amino acids	5
nta00030	Pentose phosphate pathway	3
nta00710	Carbon fixation by Calvin cycle	3
nta01200	Carbon metabolism	3
nta00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01230	Biosynthesis of amino acids	7
nta01200	Carbon metabolism	6
nta00030	Pentose phosphate pathway	5
nta00710	Carbon fixation by Calvin cycle	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	2
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
nta01230	Biosynthesis of amino acids	2
nta00750	Vitamin B6 metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00564	Glycerophospholipid metabolism	2
ath01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01230	Biosynthesis of amino acids	9
ath00270	Cysteine and methionine metabolism	5
ath00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
ath01200	Carbon metabolism	4
ath00670	One carbon pool by folate	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo00190	Oxidative phosphorylation	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2
ppo00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00061	Fatty acid biosynthesis	3
mtr01212	Fatty acid metabolism	3
mtr03050	Proteasome	2
mtr00290	Valine, leucine and isoleucine biosynthesis	2
mtr00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	2
ghi00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	4
bna03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04146	Peroxisome	4
bna03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00860	Porphyrin metabolism	3
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	6
zma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00030	Pentose phosphate pathway	8
tae01200	Carbon metabolism	8
tae00480	Glutathione metabolism	5
tae01230	Biosynthesis of amino acids	4
tae00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00740	Riboflavin metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00030	Pentose phosphate pathway	7
tae01200	Carbon metabolism	7
tae00480	Glutathione metabolism	5
tae00450	Selenocompound metabolism	3
tae00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00230	Purine metabolism	2
hvu01232	Nucleotide metabolism	2
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
hvu01230	Biosynthesis of amino acids	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	3
bdi00010	Glycolysis / Gluconeogenesis	2
bdi01240	Biosynthesis of cofactors	2
bdi01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

102598080

102600975

101255314

101267456

107778370

107788432

107806209

816181

829660

100799220

100818218

100788216

103831976

103837785

100250325

100255788

7472113

7470407

11445416

107916756

107922263

106375273

106347049

106360745

102625762

4339930

4331671

100193940

123098460

123152454

123084895

123408508

123449480

8066919

8080534

100839056

100843501

5718363

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Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	3	2	3	2	2	2	1	2	3	1	2	1	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102598080 (sot-r.1 coexpression data)

Top 50 enrichment test to 102598080 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**