ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102600448	ran-binding protein 1 homolog a
sly-u.5	101255209	ran-binding protein 1 homolog b
sly-u.5	RanBP1	Ran binding protein-1
ath-u.5	AT2G30060	Pleckstrin homology (PH) domain superfamily protein
ath-u.5	RANBP1	RAN binding protein 1
ath-u.5	SIRANBP	Pleckstrin homology (PH) domain superfamily protein
gma-u.5	100798469	ran-binding protein 1 homolog b
gma-u.5	100788910	ran-binding protein 1 homolog b
gma-u.5	100781537	ran-binding protein 1 homolog b
vvi-u.5	100247393	ran-binding protein 1 homolog a
vvi-u.5	100257001	ran-binding protein 1 homolog b
vvi-u.5	100243801	ran-binding protein 1 homolog a
ppo-u.5	7468063	ran-binding protein 1 homolog b
ppo-u.5	7488741	ran-binding protein 1 homolog c
ppo-u.5	7454853	ran-binding protein 1 homolog a
mtr-u.5	25485040	ran-binding protein 1 homolog b
mtr-u.5	11446564	ran-binding protein 1 homolog b
osa-u.5	4338501	ran-binding protein 1 homolog c
osa-u.5	4332513	ran-binding protein 1 homolog a
zma-u.5	100284131	uncharacterized LOC100284131
zma-u.5	100282524	ran-binding protein 1
zma-u.5	100282282	ran-binding protein 1

Top 50 coexpressed genes to 102600448 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102600448 (sot-r.1 coexpression data)

CoexMap"102600448"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006913 [list] [network] nucleocytoplasmic transport

(96 genes)

IEA

GO CC

GO:0005643 [list] [network] nuclear pore	(41 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4349 genes)	IEA

GO MF

GO:0005096 [list] [network] GTPase activator activity

(60 genes)

IEA

Protein

XP_006344059.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 6, nucl 2, cyto 1

(predict for XP_006344059.1)

Subcellular
localization
TargetP

other 9

(predict for XP_006344059.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102600448	sly-u.5 for 101255209	sly-u.5 for RanBP1	ath-u.5 for AT2G30060	ath-u.5 for RANBP1	ath-u.5 for SIRANBP	gma-u.5 for 100798469	gma-u.5 for 100788910	gma-u.5 for 100781537	vvi-u.5 for 100247393	vvi-u.5 for 100257001	vvi-u.5 for 100243801	ppo-u.5 for 7468063	ppo-u.5 for 7488741	ppo-u.5 for 7454853	mtr-u.5 for 25485040	mtr-u.5 for 11446564	osa-u.5 for 4338501	osa-u.5 for 4332513	zma-u.5 for 100284131	zma-u.5 for 100282524	zma-u.5 for 100282282

Ortholog

Ortholog ID: 1838

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RanBP1

SIRANBP

RANBP1

Function^*

ran-binding protein 1 homolog a

ran-binding protein 1 homolog c-like

ran-binding protein 1 homolog b

Ran binding protein-1

ran-binding protein 1 homolog b-like

ran-binding protein 1 homolog c-like

Pleckstrin homology (PH) domain superfamily protein

RAN binding protein 1

ran-binding protein 1 homolog b

ran-binding protein 1 homolog a

ran-binding protein 1 homolog b

ran-binding protein 1 homolog a

ran-binding protein 1 homolog b

ran-binding protein 1 homolog a

ran-binding protein 1 homolog b

ran-binding protein 1 homolog a

ran-binding protein 1 homolog b

ran-binding protein 1 homolog a-like

ran-binding protein 1 homolog b

ran-binding protein 1 homolog b-like

ran-binding protein 1 homolog c

ran-binding protein 1 homolog a

ran-binding protein 1

ran-binding protein 1 homolog a

ran-binding protein 1 homolog c

ran-binding protein 1 homolog a-like

ran-binding protein 1 homolog c-like

ran-binding protein 1 homolog c

ran-binding protein 1 homolog b

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03010	Ribosome	3
sot04120	Ubiquitin mediated proteolysis	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00770	Pantothenate and CoA biosynthesis	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01250	Biosynthesis of nucleotide sugars	2
ath04016	MAPK signaling pathway - plant	2
ath04070	Phosphatidylinositol signaling system	2
ath04075	Plant hormone signal transduction	2
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	7
gma01200	Carbon metabolism	3
gma04145	Phagosome	2
gma04517	IgSF CAM signaling	2
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6
bra03013	Nucleocytoplasmic transport	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	4
bra04016	MAPK signaling pathway - plant	2
bra04070	Phosphatidylinositol signaling system	2
bra04075	Plant hormone signal transduction	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	11
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	5
mtr03013	Nucleocytoplasmic transport	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00260	Glycine, serine and threonine metabolism	2
ghi00630	Glyoxylate and dicarboxylate metabolism	2
ghi00670	One carbon pool by folate	2
ghi00785	Lipoic acid metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00620	Pyruvate metabolism	4
ghi00260	Glycine, serine and threonine metabolism	2
ghi00670	One carbon pool by folate	2
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	8
cit03013	Nucleocytoplasmic transport	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae04145	Phagosome	4
tae03060	Protein export	3
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2
hvu04145	Phagosome	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4
sbi03013	Nucleocytoplasmic transport	3
sbi03015	mRNA surveillance pathway	3
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	5
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	7
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	3
cre03050	Proteasome	3
cre03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

102600448

102600266

101255209

543690

107814775

107813247

837225

835973

100798469

100788910

103836452

103857289

100243801

100247393

7468063

7496786

11446564

25485040

107958543

107958051

106425872

111204398

102629132

4338501

4332513

100193549

100282524

123085580

123052691

123448903

123441099

8081427

8083752

100829231

100841939

5720135

The preparation time of this page was 0.1 [sec].


Species	sot	sly	ath	gma	vvi	ppo	mtr	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre
Paralog	1	2	3	3	3	3	2	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102600448 (sot-r.1 coexpression data)

Top 50 enrichment test to 102600448 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**