ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102603517	villin-2
sot-r.1	102586061	villin-2
sot-r.1	102581877	villin-2-like
sot-r.1	102604247	villin-4
sly-u.5	101255152	villin-3-like
sly-u.5	101268090	villin-2
nta-r.1	107784667	villin-3
nta-r.1	107800296	villin-2
nta-r.1	107806812	villin-4
ath-u.5	VLN2	villin 2
ath-u.5	VLN3	villin 3
ath-u.5	VLN4	villin 4
gma-u.5	100803795	villin-3
gma-u.5	100809968	villin-4
gma-u.5	100807846	villin-3
bra-r.6	103834688	villin-4
bra-r.6	103841646	villin-3
bra-r.6	103845171	villin-5
vvi-u.5	100243579	villin-2
vvi-u.5	100254775	villin-4
ppo-u.5	7488953	villin-4
ppo-u.5	7468985	villin-3
ppo-u.5	7496131	villin-3
mtr-u.5	11440584	villin-4
mtr-u.5	120580940	villin-3
mtr-u.5	11425184	villin-3
ghi-r.1	107919811	villin-4
ghi-r.1	107921145	villin-2
ghi-r.1	107922079	villin-3
bna-r.1	106429523	villin-4-like
bna-r.1	106411011	villin-4-like
bna-r.1	106401256	villin-5-like
cit-r.1	102618228	villin-4
cit-r.1	102611628	villin-3-like
osa-u.5	4341731	villin-3-like
osa-u.5	4345036	villin-5-like
zma-u.5	103638857	villin-3
zma-u.5	103635078	villin-2
tae-r.2	123086053	villin-2
tae-r.2	123063635	villin-3
tae-r.2	123046533	villin-4
hvu-r.1	123445657	villin-3
hvu-r.1	123445535	villin-2-like
hvu-r.1	123427704	villin-4-like
sbi-r.1	8084077	villin-5
sbi-r.1	8082628	villin-2
bdi-r.1	100823536	villin-4
bdi-r.1	100828345	villin-3
bdi-r.1	100835760	villin-2
cre-r.1	CHLRE_12g524400v5	uncharacterized protein
cre-r.1	CHLRE_12g555550v5	uncharacterized protein

Top 50 coexpressed genes to 102603517 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102603517 (sot-r.1 coexpression data)

CoexMap"102603517"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0051014 [list] [network] actin filament severing	(4 genes)	IEA
GO:0007010 [list] [network] cytoskeleton organization	(176 genes)	IEA

GO CC

GO MF

GO:0051015 [list] [network] actin filament binding

(51 genes)

IEA

Protein

XP_006350184.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 3

(predict for XP_006350184.1)

Subcellular
localization
TargetP

other 7

(predict for XP_006350184.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102603517	sot-r.1 for 102586061	sot-r.1 for 102581877	sot-r.1 for 102604247	sly-u.5 for 101255152	sly-u.5 for 101268090	nta-r.1 for 107784667	nta-r.1 for 107800296	nta-r.1 for 107806812	ath-u.5 for VLN2	ath-u.5 for VLN3	ath-u.5 for VLN4	gma-u.5 for 100803795	gma-u.5 for 100809968	gma-u.5 for 100807846	bra-r.6 for 103834688	bra-r.6 for 103841646	bra-r.6 for 103845171	vvi-u.5 for 100243579	vvi-u.5 for 100254775	ppo-u.5 for 7488953	ppo-u.5 for 7468985	ppo-u.5 for 7496131	mtr-u.5 for 11440584	mtr-u.5 for 120580940	mtr-u.5 for 11425184	ghi-r.1 for 107919811	ghi-r.1 for 107921145	ghi-r.1 for 107922079	bna-r.1 for 106429523	bna-r.1 for 106411011	bna-r.1 for 106401256	cit-r.1 for 102618228	cit-r.1 for 102611628	osa-u.5 for 4341731	osa-u.5 for 4345036	zma-u.5 for 103638857	zma-u.5 for 103635078	tae-r.2 for 123086053	tae-r.2 for 123063635	tae-r.2 for 123046533	hvu-r.1 for 123445657	hvu-r.1 for 123445535	hvu-r.1 for 123427704	sbi-r.1 for 8084077	sbi-r.1 for 8082628	bdi-r.1 for 100823536	bdi-r.1 for 100828345	bdi-r.1 for 100835760	cre-r.1 for CHLRE_12g524400v5	cre-r.1 for CHLRE_12g555550v5

Ortholog

Ortholog ID: 593

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

VLN2

VLN3

VLN4

Function^*

villin-2

villin-2-like

villin-4

villin-2

villin-4

villin-3-like

villin 2

villin 3

villin 4

villin-4

villin-3

villin-4

villin-5

villin-2

villin-4

villin-3

villin-4

villin-3

villin-2

villin-4-like

villin-2

villin-2-like

villin-4

villin-3-like

villin-5-like

villin-2-like

Villin-4

uncharacterized LOC100279855

villin-2

villin-3

villin-2-like

villin-5

villin-2

villin-5

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	4
sot04142	Lysosome	3
sot05100	Bacterial invasion of epithelial cells	3
sot00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04142	Lysosome	5
sot04144	Endocytosis	5
sot05100	Bacterial invasion of epithelial cells	3
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	5
sly04144	Endocytosis	4
sly05100	Bacterial invasion of epithelial cells	3
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	4
sly04141	Protein processing in endoplasmic reticulum	3
sly04144	Endocytosis	3
sly05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta04016	MAPK signaling pathway - plant	2
nta00564	Glycerophospholipid metabolism	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath04142	Lysosome	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	3
ath04144	Endocytosis	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	5
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	4
gma04144	Endocytosis	4
gma05100	Bacterial invasion of epithelial cells	4
gma03013	Nucleocytoplasmic transport	4
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	3
gma03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00450	Selenocompound metabolism	2
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2
vvi04144	Endocytosis	2
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	4
ppo04142	Lysosome	2
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr00190	Oxidative phosphorylation	3
mtr04145	Phagosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr04144	Endocytosis	2
mtr04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04144	Endocytosis	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04814	Motor proteins	2
osa04141	Protein processing in endoplasmic reticulum	2
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	8
zma04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	5
zma05100	Bacterial invasion of epithelial cells	3
zma04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae03050	Proteasome	3
tae04382	Cornified envelope formation	3
tae03008	Ribosome biogenesis in eukaryotes	2
tae04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	3
cre03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00510	N-Glycan biosynthesis	5
cre04141	Protein processing in endoplasmic reticulum	5
cre00513	Various types of N-glycan biosynthesis	4

Expression

Expression pattern

Entrez Gene ID^*

102586061

102581877

102604247

101268090

101259383

107806812

107813400

818773

824908

829139

100808499

100788765

100787208

103834688

103845171

103857995

100243579

100254775

7488953

7468985

7496131

120580940

11425184

11431044

107923501

107934027

107917362

106411011

106396172

106428163

102618228

102611628

4345036

4332869

100383299

100279855

123072515

123080735

123072793

123445535

123448689

8084077

8062331

100835760

100836127

100822654

5722520

5719738

The preparation time of this page was 0.1 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	3	3	2	3	3	3	3	2	2	2	3	3	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102603517 (sot-r.1 coexpression data)

Top 50 enrichment test to 102603517 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**