ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102615418	protein SRG1-like
cit-r.1	102615722	protein SRG1-like
cit-r.1	102623070	protein SRG1-like
ath-u.5	AT4G25300	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
ath-u.5	AT1G17010	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
bra-r.6	103872488	protein SRG1
bra-r.6	103861543	protein SRG1
bra-r.6	103842815	protein SRG1
ghi-r.1	107921623	codeine O-demethylase
ghi-r.1	107924998	protein SRG1
bna-r.1	106361328	protein SRG1
bna-r.1	106389177	protein SRG1-like
gma-u.5	100797528	protein SRG1
gma-u.5	100802619	codeine O-demethylase
vvi-u.5	100264138	protein SRG1
vvi-u.5	100266726	protein SRG1
ppo-u.5	7478699	protein SRG1
ppo-u.5	7488146	protein SRG1
mtr-u.5	120577649	probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
mtr-u.5	120577650	probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
mtr-u.5	25480055	codeine O-demethylase
sly-u.5	101261774	codeine O-demethylase-like
sly-u.5	101249194	oxoglutarate-dependent flavonoid 7-O-demethylase 1-like
sot-r.1	102584428	protein SRG1-like
sot-r.1	102600841	probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
nta-r.1	107766747	oxoglutarate-dependent flavonoid 7-O-demethylase 1
nta-r.1	107761791	protein SRG1-like
osa-u.5	4334835	S-norcoclaurine synthase 1
osa-u.5	4326481	protein SRG1
zma-u.5	103625710	S-norcoclaurine synthase 1
zma-u.5	100501344	Protein SRG1
zma-u.5	100282672	naringenin,2-oxoglutarate 3-dioxygenase
tae-r.2	123099137	2-oxoglutarate-dependent dioxygenase 11
tae-r.2	123099139	2-oxoglutarate-dependent dioxygenase 11
tae-r.2	123052579	2-oxoglutarate-dependent dioxygenase 11
hvu-r.1	123439659	2-oxoglutarate-dependent dioxygenase 11-like
hvu-r.1	123449986	2-oxoglutarate-dependent dioxygenase 11-like
sbi-r.1	8057114	S-norcoclaurine synthase 1
sbi-r.1	8082623	S-norcoclaurine synthase 1
sbi-r.1	8061383	S-norcoclaurine synthase 1
bdi-r.1	100845845	S-norcoclaurine synthase 1
bdi-r.1	100845211	S-norcoclaurine synthase 1

Top 50 coexpressed genes to 102615418 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102615418 (cit-r.1 coexpression data)

CoexMap"102615418"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_006477804.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, cyto_E.R. 4, E.R._vacu 1

(predict for XP_006477804.2)

Subcellular
localization
TargetP

other 6

(predict for XP_006477804.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102615418	cit-r.1 for 102615722	cit-r.1 for 102623070	ath-u.5 for AT4G25300	ath-u.5 for AT1G17010	bra-r.6 for 103872488	bra-r.6 for 103861543	bra-r.6 for 103842815	ghi-r.1 for 107921623	ghi-r.1 for 107924998	bna-r.1 for 106361328	bna-r.1 for 106389177	gma-u.5 for 100797528	gma-u.5 for 100802619	vvi-u.5 for 100264138	vvi-u.5 for 100266726	ppo-u.5 for 7478699	ppo-u.5 for 7488146	mtr-u.5 for 120577649	mtr-u.5 for 120577650	mtr-u.5 for 25480055	sly-u.5 for 101261774	sly-u.5 for 101249194	sot-r.1 for 102584428	sot-r.1 for 102600841	nta-r.1 for 107766747	nta-r.1 for 107761791	osa-u.5 for 4334835	osa-u.5 for 4326481	zma-u.5 for 103625710	zma-u.5 for 100501344	zma-u.5 for 100282672	tae-r.2 for 123099137	tae-r.2 for 123099139	tae-r.2 for 123052579	hvu-r.1 for 123439659	hvu-r.1 for 123449986	sbi-r.1 for 8057114	sbi-r.1 for 8082623	sbi-r.1 for 8061383	bdi-r.1 for 100845845	bdi-r.1 for 100845211

Ortholog

Ortholog ID: 162

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SRG1

Function^*

protein SRG1-like

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

senescence-related gene 1

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

protein SRG1-like

protein SRG1

codeine O-demethylase

protein SRG1-like

protein SRG1

S-norcoclaurine synthase 1

protein SRG1

probable 2-oxoglutarate/Fe(II)-dependent dioxygenase

codeine O-demethylase

protein SRG1-like

oxoglutarate-dependent flavonoid 7-O-demethylase 1

protein SRG1

2-oxoglutarate-dependent dioxygenase 11-like

S-norcoclaurine synthase 1

Protein SRG1

naringenin,2-oxoglutarate 3-dioxygenase

2-oxoglutarate-dependent dioxygenase 11

2-oxoglutarate-dependent dioxygenase 11-like

S-norcoclaurine synthase 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	6
cit00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00900	Terpenoid backbone biosynthesis	2
cit00380	Tryptophan metabolism	2
cit00630	Glyoxylate and dicarboxylate metabolism	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	3
ath01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00910	Nitrogen metabolism	2
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00310	Lysine degradation	7
bna00071	Fatty acid degradation	4
bna00280	Valine, leucine and isoleucine degradation	4
bna00380	Tryptophan metabolism	4
bna00620	Pyruvate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	2
gma00561	Glycerolipid metabolism	2
gma00410	beta-Alanine metabolism	2
gma00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00270	Cysteine and methionine metabolism	4
vvi00710	Carbon fixation by Calvin cycle	4
vvi01200	Carbon metabolism	4
vvi00020	Citrate cycle (TCA cycle)	3
vvi00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	3
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	5
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ppo00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00240	Pyrimidine metabolism	2
ppo00410	beta-Alanine metabolism	2
ppo00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00460	Cyanoamino acid metabolism	2
mtr00500	Starch and sucrose metabolism	2
mtr00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00460	Cyanoamino acid metabolism	2
mtr00500	Starch and sucrose metabolism	2
mtr00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	3
mtr00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
sly01230	Biosynthesis of amino acids	5
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00460	Cyanoamino acid metabolism	6
nta00500	Starch and sucrose metabolism	6
nta00999	Biosynthesis of various plant secondary metabolites	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00600	Sphingolipid metabolism	2
osa04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00941	Flavonoid biosynthesis	4
sbi04712	Circadian rhythm - plant	3

Expression

Expression pattern

Entrez Gene ID^*

102630196

102616390

838271

838272

844191

103842818

103832334

117125651

107924998

121222440

106354695

106434908

100802304

100810764

100775942

100267786

100247046

7488146

7459139

7459137

120577599

120577597

120577598

101260598

101258026

102584100

102581777

107810054

107777314

107831059

4326481

112935986

4326482

103625710

100501344

100282672

123099137

123099139

123099140

123439659

123449986

8057114

8081558

8078169

100845845

100845211

The preparation time of this page was 0.2 [sec].


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	2	3	2	2	2	2	2	3	2	2	2	2	3	3	2	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102615418 (cit-r.1 coexpression data)

Top 50 enrichment test to 102615418 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**