ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102618003	uncharacterized LOC102618003
ath-u.5	AT2G17930	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein
ath-u.5	AT4G36080	phosphotransferases/inositol or phosphatidylinositol kinase
bra-r.6	103837832	transformation/transcription domain-associated protein
bra-r.6	103871184	transformation/transcription domain-associated protein
bra-r.6	103874096	transformation/transcription domain-associated protein
ghi-r.1	107909450	transformation/transcription domain-associated protein
ghi-r.1	107936541	transformation/transcription domain-associated protein
ghi-r.1	107912994	transformation/transcription domain-associated protein
bna-r.1	106350519	transformation/transcription domain-associated protein-like
bna-r.1	106389480	transformation/transcription domain-associated protein-like
bna-r.1	106353942	transformation/transcription domain-associated protein
gma-u.5	100800422	transformation/transcription domain-associated protein
gma-u.5	100819389	transformation/transcription domain-associated protein
vvi-u.5	100255847	transcription-associated protein 1
ppo-u.5	18101081	uncharacterized LOC18101081
ppo-u.5	7486566	uncharacterized LOC7486566
mtr-u.5	11434915	transformation/transcription domain-associated protein
sly-u.5	101258912	uncharacterized LOC101258912
sot-r.1	102588838	transformation/transcription domain-associated protein
nta-r.1	107805619	uncharacterized LOC107805619
nta-r.1	107801589	uncharacterized LOC107801589
osa-u.5	9270052	uncharacterized LOC9270052
zma-u.5	100382790	transformation/transcription domain-associated protein
tae-r.2	123187740	transcription-associated protein 1
tae-r.2	123051855	transcription-associated protein 1
tae-r.2	123043982	transcription-associated protein 1
hvu-r.1	123425027	transformation/transcription domain-associated protein-like
sbi-r.1	8072210	transcription-associated protein 1
bdi-r.1	100839256	transcription-associated protein 1
cre-r.1	CHLRE_02g088750v5	uncharacterized protein

Top 50 coexpressed genes to 102618003 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102618003 (cit-r.1 coexpression data)

CoexMap"102618003"

[Cytoscape]

Annotation

functional annotation

KEGG

cit03082 [list] [network] ATP-dependent chromatin remodeling (56 genes)

GO BP

GO:0006281 [list] [network] DNA repair	(225 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1325 genes)	IEA

GO CC

GO:0035267 [list] [network] NuA4 histone acetyltransferase complex	(8 genes)	IEA
GO:0000124 [list] [network] SAGA complex	(16 genes)	IEA
GO:0005634 [list] [network] nucleus	(2569 genes)	IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity	(99 genes)	IEA
GO:0005515 [list] [network] protein binding	(3939 genes)	IEA

Protein

XP_006466944.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 8, nucl 1, E.R. 1, pero 1

(predict for XP_006466944.1)

Subcellular
localization
TargetP

other 8

(predict for XP_006466944.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102618003	ath-u.5 for AT2G17930	ath-u.5 for AT4G36080	bra-r.6 for 103837832	bra-r.6 for 103871184	bra-r.6 for 103874096	ghi-r.1 for 107909450	ghi-r.1 for 107936541	ghi-r.1 for 107912994	bna-r.1 for 106350519	bna-r.1 for 106389480	bna-r.1 for 106353942	gma-u.5 for 100800422	gma-u.5 for 100819389	vvi-u.5 for 100255847	ppo-u.5 for 18101081	ppo-u.5 for 7486566	mtr-u.5 for 11434915	sly-u.5 for 101258912	sot-r.1 for 102588838	nta-r.1 for 107805619	nta-r.1 for 107801589	osa-u.5 for 9270052	zma-u.5 for 100382790	tae-r.2 for 123187740	tae-r.2 for 123051855	tae-r.2 for 123043982	hvu-r.1 for 123425027	sbi-r.1 for 8072210	bdi-r.1 for 100839256	cre-r.1 for CHLRE_02g088750v5

Ortholog

Ortholog ID: 6218

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC102618003

Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein

phosphotransferases/inositol or phosphatidylinositol kinase

transformation/transcription domain-associated protein

transcription-associated protein 1

uncharacterized LOC18101081

uncharacterized LOC7486566

transformation/transcription domain-associated protein

uncharacterized LOC101258912

transformation/transcription domain-associated protein

uncharacterized LOC107805619

uncharacterized LOC107801589

uncharacterized LOC9270052

transformation/transcription domain-associated protein

transcription-associated protein 1

transformation/transcription domain-associated protein-like

transcription-associated protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	3
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath03040	Spliceosome	2
ath03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03082	ATP-dependent chromatin remodeling	2
bra04136	Autophagy - other	2
bra04518	Integrin signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	4
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03082	ATP-dependent chromatin remodeling	2
bra04136	Autophagy - other	2
bra04518	Integrin signaling	2
bra00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5
ghi03082	ATP-dependent chromatin remodeling	4
ghi03018	RNA degradation	3
ghi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03040	Spliceosome	3
ghi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03040	Spliceosome	3
ghi03018	RNA degradation	3
ghi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	4
bna04120	Ubiquitin mediated proteolysis	3
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	4
bna04120	Ubiquitin mediated proteolysis	4
bna03015	mRNA surveillance pathway	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	5
gma03082	ATP-dependent chromatin remodeling	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	4
tae03082	ATP-dependent chromatin remodeling	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03082	ATP-dependent chromatin remodeling	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae03015	mRNA surveillance pathway	3
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

102618003

816303

829764

103837832

103871184

103874096

107909450

107936541

107912994

106353942

106354240

106400090

100800422

100819389

100255847

18101081

7486566

11434915

101258912

102588838

107805619

107801589

9270052

100382790

123187740

123051855

123043982

123425027

8072210

100839256

5727442

The preparation time of this page was 0.1 [sec].


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	2	3	3	3	2	1	2	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102618003 (cit-r.1 coexpression data)

Top 50 enrichment test to 102618003 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**