ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cit-r.1	102622607	coatomer subunit beta'-3-like
ath-u.5	AT3G15980	Coatomer, beta' subunit
ath-u.5	AT1G52360	Coatomer, beta' subunit
ath-u.5	AT1G79990	coatomer subunit beta-2
gma-u.5	100804239	coatomer subunit beta'-2
gma-u.5	100807969	coatomer subunit beta'-2
gma-u.5	100815780	coatomer subunit beta'-2
vvi-u.5	100261812	coatomer subunit beta'-2
vvi-u.5	100247411	coatomer subunit beta'-1
vvi-u.5	100256305	coatomer subunit beta'-2
ppo-u.5	7472972	coatomer subunit beta'-1
ppo-u.5	7483508	coatomer subunit beta'-2
mtr-u.5	25487934	coatomer subunit beta'-2
mtr-u.5	25491385	coatomer subunit beta'-2
mtr-u.5	25487932	coatomer subunit beta'-3
sly-u.5	101264409	coatomer subunit beta'-1
sly-u.5	101248561	coatomer subunit beta'-2
sly-u.5	101247999	coatomer subunit beta'-2
osa-u.5	4328694	coatomer subunit beta'-2-like
osa-u.5	4340097	coatomer subunit beta'-1-like
zma-u.5	100383977	uncharacterized LOC100383977
zma-u.5	103638095	coatomer subunit beta'-1
zma-u.5	100383405	putative coatomer beta subunit family protein

Top 50 coexpressed genes to 102622607 (cit-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102622607 (cit-r.1 coexpression data)

CoexMap"102622607"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	(22 genes)	IEA
GO:0006891 [list] [network] intra-Golgi vesicle-mediated transport	(22 genes)	IEA
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport	(72 genes)	IEA
GO:0006886 [list] [network] intracellular protein transport	(231 genes)	IEA

GO CC

GO:0030126 [list] [network] COPI vesicle coat

(11 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(3939 genes)

IEA

Protein

XP_006465562.2 [sequence] [blastp]
XP_052300588.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 1, nucl 1, extr 1, cysk 1, cysk_nucl 1	(predict for XP_006465562.2)
cyto 4, nucl 3, cysk 1, plas 1, pero 1	(predict for XP_052300588.1)

Subcellular
localization
TargetP

other 8	(predict for XP_006465562.2)
other 8	(predict for XP_052300588.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102622607	ath-u.5 for AT3G15980	ath-u.5 for AT1G52360	ath-u.5 for AT1G79990	gma-u.5 for 100804239	gma-u.5 for 100807969	gma-u.5 for 100815780	vvi-u.5 for 100261812	vvi-u.5 for 100247411	vvi-u.5 for 100256305	ppo-u.5 for 7472972	ppo-u.5 for 7483508	mtr-u.5 for 25487934	mtr-u.5 for 25491385	mtr-u.5 for 25487932	sly-u.5 for 101264409	sly-u.5 for 101248561	sly-u.5 for 101247999	osa-u.5 for 4328694	osa-u.5 for 4340097	zma-u.5 for 100383977	zma-u.5 for 103638095	zma-u.5 for 100383405

Ortholog

Ortholog ID: 971

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

hvu

sbi

bdi

cre

Symbol

Function^*

coatomer subunit beta'-3-like

coatomer subunit beta'-2-like

coatomer subunit beta-2

Coatomer, beta' subunit

coatomer subunit beta'-3

coatomer subunit beta'-2

coatomer subunit beta'-3-like

coatomer subunit beta'-2

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta'-3

coatomer subunit beta'-2

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta'-2-like

coatomer subunit beta'-1-like

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta'-1-like

uncharacterized LOC100216577

coatomer subunit beta'-1

coatomer subunit beta'-2

coatomer subunit beta'-1

coatomer subunit beta'-2

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	6
cit04626	Plant-pathogen interaction	3
cit00071	Fatty acid degradation	3
cit00350	Tyrosine metabolism	3
cit00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04144	Endocytosis	3
cit05100	Bacterial invasion of epithelial cells	2
cit04142	Lysosome	2
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath04144	Endocytosis	2
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2
bra00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi00100	Steroid biosynthesis	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	7
bna03060	Protein export	3
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	4
gma00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	3
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
gma01230	Biosynthesis of amino acids	2
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00592	alpha-Linolenic acid metabolism	4
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi00902	Monoterpenoid biosynthesis	2
vvi00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	4
ppo04144	Endocytosis	4
ppo05100	Bacterial invasion of epithelial cells	3
ppo03015	mRNA surveillance pathway	2
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr04144	Endocytosis	3
mtr05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	5
sot04141	Protein processing in endoplasmic reticulum	4
sot04142	Lysosome	3
sot05100	Bacterial invasion of epithelial cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	5
zma04144	Endocytosis	2
zma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	4
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04142	Lysosome	2
hvu05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	4
hvu04142	Lysosome	2
hvu04144	Endocytosis	2
hvu05100	Bacterial invasion of epithelial cells	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi04142	Lysosome	2
sbi05100	Bacterial invasion of epithelial cells	2
sbi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	4

Expression

Expression pattern

Entrez Gene ID^*

102622607

102622899

844339

820842

103840347

103868507

107944309

107951998

106404097

106405924

106794271

100807969

100256305

7472972

7483508

25487932

25487934

101264409

101248561

102604581

102603830

107788062

107771428

4340097

100216577

103638095

123412026

123404728

8082944

8065049

100823641

100837884

5727962

The preparation time of this page was 1.7 [sec].


Species	cit	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	3	3	3	2	3	3	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102622607 (cit-r.1 coexpression data)

Top 50 enrichment test to 102622607 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**