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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102624841   zinc finger CCCH domain-containing protein 41 
 ath-u.5   AT3G27700   zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 
 gma-u.5   100802396   zinc finger CCCH domain-containing protein 41 
 gma-u.5   100789713   zinc finger CCCH domain-containing protein 41 
 vvi-u.5   100259455   zinc finger CCCH domain-containing protein 41 
 ppo-u.5   7487837   zinc finger CCCH domain-containing protein 41 
 mtr-u.5   25495147   zinc finger CCCH domain-containing protein 41 
 sly-u.5   101258214   zinc finger CCCH domain-containing protein 41 
 sly-u.5   101250092   zinc finger CCCH domain-containing protein 41-like 
 osa-u.5   4335690   zinc finger CCCH domain-containing protein 27-like 
 zma-u.5   100501426   uncharacterized LOC100501426 

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Top 50 coexpressed genes to 102624841 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102624841 (cit-r.1 coexpression data)

CoexMap"102624841"


citLOC102624841 | Entrez gene ID : 102624841    
Species cit ath gma vvi ppo mtr sly osa zma bdi hvu bra bna sbi ghi sot nta cre tae
Paralog 1 1 2 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (2569 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1117 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (1833 genes)  IEA  
Protein XP_006470267.2 [sequence] [blastp]
XP_006470268.2 [sequence] [blastp]
XP_006470270.2 [sequence] [blastp]
XP_024951028.2 [sequence] [blastp]
XP_052290744.1 [sequence] [blastp]
XP_052290745.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  golg 1  (predict for XP_006470267.2)
nucl 9,  cyto 1,  golg 1  (predict for XP_006470268.2)
nucl 9,  cyto 1,  golg 1  (predict for XP_006470270.2)
nucl 9,  cyto 1,  golg 1  (predict for XP_024951028.2)
nucl 9,  cyto 1,  golg 1  (predict for XP_052290744.1)
nucl 7,  chlo 1,  plas 1,  cysk 1,  chlo_mito 1,  cysk_plas 1  (predict for XP_052290745.1)
Subcellular
localization
TargetP
other 8,  chlo 4  (predict for XP_006470267.2)
other 8,  chlo 4  (predict for XP_006470268.2)
other 8,  chlo 4  (predict for XP_006470270.2)
other 8,  chlo 4  (predict for XP_024951028.2)
other 8,  chlo 4  (predict for XP_052290744.1)
other 6,  mito 4  (predict for XP_052290745.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102624841
ath-u.5
for
AT3G27700
gma-u.5
for
100802396
gma-u.5
for
100789713
vvi-u.5
for
100259455
ppo-u.5
for
7487837
mtr-u.5
for
25495147
sly-u.5
for
101258214
sly-u.5
for
101250092
osa-u.5
for
4335690
zma-u.5
for
100501426


Ortholog ID: 4922
Species cit ath bra bra ghi ghi bna bna gma gma vvi ppo mtr sly sly sot sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC102624841 AT3G27700 LOC103875195 LOC103854219 LOC107888662 LOC107892262 LOC106382135 LOC106349231 LOC100802396 LOC100789713 LOC100259455 LOC7487837 LOC25495147 LOC101250092 LOC101258214 LOC102602784 LOC102601193 LOC107828537 LOC107786331 LOC4335690 LOC100501426 LOC123148074 LOC123069492 LOC123451610 LOC8070836 LOC100829287
Function* zinc finger CCCH domain-containing protein 41 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41-like zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41-like zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41-like zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 41 zinc finger CCCH domain-containing protein 27-like uncharacterized LOC100501426 zinc finger CCCH domain-containing protein 27 zinc finger CCCH domain-containing protein 27 zinc finger CCCH domain-containing protein 27 zinc finger CCCH domain-containing protein 27 zinc finger CCCH domain-containing protein 27
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit04120 Ubiquitin mediated proteolysis 2
cit03015 mRNA surveillance pathway 2
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 6
gma03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03420 Nucleotide excision repair 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00450 Selenocompound metabolism 3
nta00970 Aminoacyl-tRNA biosynthesis 3
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102624841 822392 103875195 103854219 107888662 107892262 106382135 106349231 100802396 100789713 100259455 7487837 25495147 101250092 101258214 102602784 102601193 107828537 107786331 4335690 100501426 123148074 123069492 123451610 8070836 100829287
The preparation time of this page was 1.5 [sec].