ATTED-II : GeneCoexpression result

Species	Gene	Description
cit-r.1	102625013	uncharacterized LOC102625013
ath-u.5	AT1G07210	Ribosomal protein S18
bra-r.6	103843967	uncharacterized LOC103843967
bra-r.6	103843475	uncharacterized LOC103843475
ghi-r.1	121212674	uncharacterized LOC121212674
ghi-r.1	107937026	uncharacterized LOC107937026
bna-r.1	125578627	uncharacterized LOC125578627
bna-r.1	BNAANNG15810D	uncharacterized BNAANNG15810D
bna-r.1	106402033	uncharacterized LOC106402033
gma-u.5	100820548	30S ribosomal protein S18
vvi-u.5	100263805	uncharacterized LOC100263805
ppo-u.5	18100521	uncharacterized LOC18100521
mtr-u.5	25499734	uncharacterized LOC25499734
sly-u.5	101260982	uncharacterized LOC101260982
sot-r.1	102593686	uncharacterized LOC102593686
sot-r.1	102595364	uncharacterized LOC102595364
nta-r.1	107827312	uncharacterized LOC107827312
osa-u.5	4349032	uncharacterized LOC4349032
zma-u.5	100274313	uncharacterized LOC100274313
zma-u.5	100191266	uncharacterized LOC100191266
tae-r.2	123047222	uncharacterized LOC123047222
tae-r.2	123054677	uncharacterized LOC123054677
tae-r.2	123092653	uncharacterized LOC123092653
hvu-r.1	123433113	uncharacterized LOC123433113
hvu-r.1	123442155	uncharacterized LOC123442155
sbi-r.1	8067566	uncharacterized LOC8067566
sbi-r.1	8065211	uncharacterized LOC8065211
bdi-r.1	100841415	uncharacterized LOC100841415
bdi-r.1	100838711	uncharacterized LOC100838711
cre-r.1	CHLRE_09g388282v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006412 [list] [network] translation

(405 genes)

IEA

GO CC

GO:0005763 [list] [network] mitochondrial small ribosomal subunit	(8 genes)	IEA
GO:0005840 [list] [network] ribosome	(289 genes)	IEA

GO MF

GO:0070181 [list] [network] small ribosomal subunit rRNA binding	(11 genes)	IEA
GO:0003735 [list] [network] structural constituent of ribosome	(284 genes)	IEA

Protein

XP_006488537.2 [sequence] [blastp]
XP_052288044.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, mito 1	(predict for XP_006488537.2)
nucl 5, cyto 4	(predict for XP_052288044.1)

Subcellular
localization
TargetP

mito 6, chlo 4	(predict for XP_006488537.2)
mito 6, chlo 4	(predict for XP_052288044.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cit-r.1 for 102625013	ath-u.5 for AT1G07210	bra-r.6 for 103843967	bra-r.6 for 103843475	ghi-r.1 for 121212674	ghi-r.1 for 107937026	bna-r.1 for 125578627	bna-r.1 for BNAANNG15810D	bna-r.1 for 106402033	gma-u.5 for 100820548	vvi-u.5 for 100263805	ppo-u.5 for 18100521	mtr-u.5 for 25499734	sly-u.5 for 101260982	sot-r.1 for 102593686	sot-r.1 for 102595364	nta-r.1 for 107827312	osa-u.5 for 4349032	zma-u.5 for 100274313	zma-u.5 for 100191266	tae-r.2 for 123047222	tae-r.2 for 123054677	tae-r.2 for 123092653	hvu-r.1 for 123433113	hvu-r.1 for 123442155	sbi-r.1 for 8067566	sbi-r.1 for 8065211	bdi-r.1 for 100841415	bdi-r.1 for 100838711	cre-r.1 for CHLRE_09g388282v5

Ortholog

Ortholog ID: 6118

Species

cit

ath

bra

ghi

bna

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC102625013

Ribosomal protein S18

uncharacterized LOC103843967

uncharacterized LOC103843475

uncharacterized LOC121212674

uncharacterized LOC107937026

uncharacterized LOC125578627

uncharacterized BNAANNG15810D

uncharacterized BNAA10G04660D

30S ribosomal protein S18

uncharacterized LOC100263805

uncharacterized LOC18100521

uncharacterized LOC25499734

uncharacterized LOC101260982

uncharacterized LOC102593686

uncharacterized LOC102595364

uncharacterized LOC107827312

uncharacterized LOC4349032

uncharacterized LOC100274313

uncharacterized LOC100191266

uncharacterized LOC123047222

uncharacterized LOC123054677

uncharacterized LOC123122989

uncharacterized LOC123433113

uncharacterized LOC123442155

uncharacterized LOC8067566

uncharacterized LOC8065211

uncharacterized LOC100841415

uncharacterized LOC100838711

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	3
bra00250	Alanine, aspartate and glutamate metabolism	2
bra01240	Biosynthesis of cofactors	2
bra03018	RNA degradation	2
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00240	Pyrimidine metabolism	2
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04626	Plant-pathogen interaction	2
bna03450	Non-homologous end-joining	2
bna03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	4
zma00220	Arginine biosynthesis	2
zma00240	Pyrimidine metabolism	2
zma00250	Alanine, aspartate and glutamate metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00061	Fatty acid biosynthesis	5
zma01212	Fatty acid metabolism	4
zma01200	Carbon metabolism	4
zma00010	Glycolysis / Gluconeogenesis	3
zma01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	7
sbi01200	Carbon metabolism	3
sbi00270	Cysteine and methionine metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	7
sbi01200	Carbon metabolism	3
sbi00270	Cysteine and methionine metabolism	2
sbi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03013	Nucleocytoplasmic transport	2
bdi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	3

Expression

Expression pattern

Entrez Gene ID^*

102625013

837232

103843967

103843475

121212674

107937026

125578627

106419814

106391130

100820548

100263805

18100521

25499734

101260982

102593686

102595364

107827312

4349032

100274313

100191266

123047222

123054677

123122989

123433113

123442155

8067566

8065211

100841415

100838711

5720585

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102625013 (cit-r.1 coexpression data)

Top 50 enrichment test to 102625013 (cit-r.1 coexpression data)


Species	cit	ath	bra	ghi	bna	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	1	2	2	3	1	1	1	1	1	2	1	1	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102625013 (cit-r.1 coexpression data)

Top 50 enrichment test to 102625013 (cit-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**