ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	NF-YC13	nuclear factor Y, subunit C13
bra-r.6	103827983	nuclear transcription factor Y subunit C-5
ghi-r.1	107909838	DNA polymerase epsilon subunit C
ghi-r.1	107886467	DNA polymerase epsilon subunit C
bna-r.1	106356523	nuclear transcription factor Y subunit C-5-like
bna-r.1	106352495	nuclear transcription factor Y subunit C-5
gma-u.5	DPB3-2	dr1-associated corepressor-like
mtr-u.5	11441062	DNA polymerase epsilon subunit C
sly-u.5	101265544	uncharacterized LOC101265544
nta-r.1	107786176	uncharacterized LOC107786176
nta-r.1	107784093	uncharacterized LOC107784093
zma-u.5	101027179	histone-like transcription factor and archaeal histone family protein
tae-r.2	123077497	nuclear transcription factor Y subunit C-6
tae-r.2	123065022	nuclear transcription factor Y subunit C-6
tae-r.2	123060426	nuclear transcription factor Y subunit C-6
hvu-r.1	123442951	nucleolin
bdi-r.1	100830304	translation initiation factor IF-2
cre-r.1	CHLRE_03g193900v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1325 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2569 genes)

IEA

GO MF

GO:0046982 [list] [network] protein heterodimerization activity

(66 genes)

IEA

Protein

XP_006484092.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, cysk 2, nucl 1, extr 1, golg 1, nucl_plas 1

(predict for XP_006484092.1)

Subcellular
localization
TargetP

other 9

(predict for XP_006484092.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for NF-YC13	bra-r.6 for 103827983	ghi-r.1 for 107909838	ghi-r.1 for 107886467	bna-r.1 for 106356523	bna-r.1 for 106352495	gma-u.5 for DPB3-2	mtr-u.5 for 11441062	sly-u.5 for 101265544	nta-r.1 for 107786176	nta-r.1 for 107784093	zma-u.5 for 101027179	tae-r.2 for 123077497	tae-r.2 for 123065022	tae-r.2 for 123060426	hvu-r.1 for 123442951	bdi-r.1 for 100830304	cre-r.1 for CHLRE_03g193900v5

Ortholog

Ortholog ID: 10977

Species

ath

bra

ghi

bna

gma

mtr

sly

nta

zma

tae

hvu

bdi

cre

Symbol

NF-YC13

DPB3-2

Function^*

nuclear factor Y, subunit C13

nuclear transcription factor Y subunit C-5

DNA polymerase epsilon subunit C

nuclear transcription factor Y subunit C-5-like

nuclear transcription factor Y subunit C-5

dr1-associated corepressor-like

DNA polymerase epsilon subunit C

uncharacterized LOC101265544

uncharacterized LOC107786176

uncharacterized LOC107784093

histone-like transcription factor and archaeal histone family protein

nuclear transcription factor Y subunit C-6

nucleolin

translation initiation factor IF-2

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	6
ath03430	Mismatch repair	5
ath03420	Nucleotide excision repair	4
ath03440	Homologous recombination	4
ath03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	5
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2
gma03410	Base excision repair	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4
mtr03060	Protein export	3
mtr04145	Phagosome	3
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03430	Mismatch repair	2
sly03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	12
nta03460	Fanconi anemia pathway	3
nta03440	Homologous recombination	2
nta00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	13
tae03020	RNA polymerase	3
tae03410	Base excision repair	2
tae03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	15
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	12
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03030	DNA replication	2
bdi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	4

Expression

Expression pattern

Entrez Gene ID^*

834343

103827983

107909838

107886467

106356523

106352495

100793004

11441062

101265544

107786176

107784093

101027179

123077497

123065022

123060426

123442951

100830304

5718711

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to NF-YC13 (ath-u.5 coexpression data)

Top 50 enrichment test to NF-YC13 (ath-u.5 coexpression data)


Species	ath	bra	ghi	bna	gma	mtr	sly	nta	zma	tae	hvu	bdi	cre	sbi	osa	sot	cit	ppo	vvi
Paralog	1	1	2	2	1	1	1	2	1	3	1	1	1	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to NF-YC13 (ath-u.5 coexpression data)

Top 50 enrichment test to NF-YC13 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**