ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	103639375	uncharacterized LOC103639375
zma-r.6	103639375	uncharacterized LOC103639375
osa-u.5	4332202	uncharacterized LOC4332202
ath-u.5	AT3G18310	TATA box-binding protein associated factor RNA polymerase I subunit C
gma-u.5	100797045	uncharacterized LOC100797045
vvi-u.5	104882767	hypothetical protein
ppo-u.5	7454009	uncharacterized LOC7454009
mtr-u.5	11410330	uncharacterized LOC11410330

functional annotation

KEGG

GO BP

GO:0006360 [list] [network] transcription by RNA polymerase I

(17 genes)

IEA

GO CC

GO:0001650 [list] [network] fibrillar center

(1 genes)

IEA

GO MF

GO:0001164 [list] [network] RNA polymerase I core promoter sequence-specific DNA binding

(2 genes)

IEA

Protein

NP_001338671.1 [sequence] [blastp]

Subcellular
localization
wolf

E.R. 4, nucl 2, E.R._plas 2, cyto 1, mito 1, nucl_plas 1

(predict for NP_001338671.1)

Subcellular
localization
TargetP

chlo 3

(predict for NP_001338671.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103639375	zma-r.6 for 103639375	osa-u.5 for 4332202	ath-u.5 for AT3G18310	gma-u.5 for 100797045	vvi-u.5 for 104882767	ppo-u.5 for 7454009	mtr-u.5 for 11410330

Ortholog ID: 9490

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC103639375

uncharacterized LOC8056823

uncharacterized LOC4332202

uncharacterized LOC123092818

uncharacterized LOC123085211

uncharacterized LOC123449191

uncharacterized LOC100826696

TATA box-binding protein associated factor RNA polymerase I subunit C

uncharacterized LOC100797045

uncharacterized LOC103869575

hypothetical protein

uncharacterized LOC7454009

uncharacterized LOC11410330

uncharacterized LOC107939860

uncharacterized LOC107941698

uncharacterized LOC106436027

uncharacterized LOC107057673

uncharacterized LOC102613824

uncharacterized LOC107774499

uncharacterized LOC107785303

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00630	Glyoxylate and dicarboxylate metabolism	6
ghi01200	Carbon metabolism	4
ghi00380	Tryptophan metabolism	2
ghi04016	MAPK signaling pathway - plant	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	7
cit03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

103639375

8056823

4332202

123092818

123085211

123449191

100826696

821360

100797045

103869575

104882767

7454009

11410330

107939860

107941698

106436027

107057673

102613824

107774499

107785303

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103639375 (zma-u.5 coexpression data)

Top 50 enrichment test to 103639375 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	sly	ghi	sot	nta	cre	tae
Paralog	2	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103639375 (zma-u.5 coexpression data)

Top 50 enrichment test to 103639375 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**