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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   103654456   pentatricopeptide repeat-containing protein At4g02750 
 zma-r.6   103654456   pentatricopeptide repeat-containing protein At4g02750 
 sbi-r.1   8067045   pentatricopeptide repeat-containing protein At1g09410 
 osa-u.5   4345851   pentatricopeptide repeat-containing protein At1g09410, mitochondrial 
 hvu-r.1   123444268   pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like 
 bdi-r.1   100846629   pentatricopeptide repeat-containing protein At1g56690, mitochondrial 
 gma-u.5   100779822   pentatricopeptide repeat-containing protein At4g02750 
 sly-u.5   101260295   pentatricopeptide repeat-containing protein At4g02750-like 
 vvi-u.5   104880343   pentatricopeptide repeat-containing protein At4g02750 
 vvi-u.5   100854306   pentatricopeptide repeat-containing protein At4g02750 
 mtr-u.5   25501872   pentatricopeptide repeat-containing protein At4g02750 
 ghi-r.1   107950432   pentatricopeptide repeat-containing protein At4g02750 
 ghi-r.1   107951733   pentatricopeptide repeat-containing protein At4g02750 
 sot-r.1   102587943   pentatricopeptide repeat-containing protein At4g02750-like 
 cit-r.1   102624358   pentatricopeptide repeat-containing protein At4g02750-like 
 nta-r.1   107810535   pentatricopeptide repeat-containing protein At4g16470-like 
 nta-r.1   107813078   pentatricopeptide repeat-containing protein At5g56310-like 

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Top 50 coexpressed genes to 103654456 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103654456 (zma-u.5 coexpression data)

CoexMap"103654456"


zmaLOC103654456 | Entrez gene ID : 103654456    
Species zma sbi osa hvu bdi gma sly vvi mtr ghi sot cit nta tae bna ppo cre ath bra
Paralog 2 1 1 1 1 1 1 2 1 2 1 1 2 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (350 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4389 genes)  IEA  
Protein XP_020408388.1 [sequence] [blastp]
XP_020408389.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  E.R. 2  (predict for XP_020408388.1)
chlo 4,  mito 4,  E.R. 2  (predict for XP_020408389.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_020408388.1)
mito 8  (predict for XP_020408389.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
103654456
zma-r.6
for
103654456
sbi-r.1
for
8067045
osa-u.5
for
4345851
hvu-r.1
for
123444268
bdi-r.1
for
100846629
gma-u.5
for
100779822
sly-u.5
for
101260295
vvi-u.5
for
104880343
vvi-u.5
for
100854306
mtr-u.5
for
25501872
ghi-r.1
for
107950432
ghi-r.1
for
107951733
sot-r.1
for
102587943
cit-r.1
for
102624358
nta-r.1
for
107810535
nta-r.1
for
107813078


Ortholog ID: 12569
Species zma sbi osa hvu bdi gma sly vvi vvi mtr ghi ghi sot cit nta nta
Symbol LOC103654456 LOC8067045 LOC4345851 LOC123444268 LOC100846629 LOC100779822 LOC101260295 LOC104880343 LOC100854306 LOC25501872 LOC107950432 LOC107951733 LOC102587943 LOC102624358 LOC107810535 LOC107813078
Function* pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At1g09410 pentatricopeptide repeat-containing protein At1g09410, mitochondrial pentatricopeptide repeat-containing protein At1g56690, mitochondrial-like pentatricopeptide repeat-containing protein At1g56690, mitochondrial pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At4g02750-like pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At4g02750 pentatricopeptide repeat-containing protein At4g02750-like pentatricopeptide repeat-containing protein At4g02750-like pentatricopeptide repeat-containing protein At4g16470-like pentatricopeptide repeat-containing protein At5g56310-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 9
sbi00510 N-Glycan biosynthesis 7
sbi00513 Various types of N-glycan biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103654456 8067045 4345851 123444268 100846629 100779822 101260295 104880343 100854306 25501872 107950432 107951733 102587943 102624358 107810535 107813078
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