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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103829078   agamous-like MADS-box protein AGL9 homolog 
 bra-r.6   103839053   agamous-like MADS-box protein AGL9 homolog 
 bra-r.6   103835412   agamous-like MADS-box protein AGL9 homolog 
 bna-r.1   106433239   developmental protein SEPALLATA 1 
 bna-r.1   125580827   developmental protein SEPALLATA 2-like 
 bna-r.1   111198100   developmental protein SEPALLATA 3 
 ath-u.5   SEP2   K-box region and MADS-box transcription factor family protein 
 ath-u.5   SEP3   K-box region and MADS-box transcription factor family protein 
 ath-u.5   SEP1   K-box region and MADS-box transcription factor family protein 
 ghi-r.1   107911542   agamous-like MADS-box protein MADS4 
 ghi-r.1   107893809   agamous-like MADS-box protein MADS2 
 ghi-r.1   107899219   agamous-like MADS-box protein MADS2 
 cit-r.1   102611482   agamous-like MADS-box protein MADS2 
 cit-r.1   102620094   agamous-like MADS-box protein MADS2 
 cit-r.1   102615242   agamous-like MADS-box protein MADS2 
 gma-u.5   100786066   agamous-like MADS-box protein MADS2 
 gma-u.5   100811049   agamous-like MADS-box protein MADS2 
 gma-u.5   100778931   agamous-like MADS-box protein MADS4 
 vvi-u.5   100251943   agamous-like MADS-box protein MADS2 
 vvi-u.5   100232936   agamous-like MADS-box protein MADS2 
 vvi-u.5   MADS4   MADS-box protein 4 
 sly-u.5   MADS1   MADS-box protein 1 
 nta-r.1   107797730   agamous-like MADS-box protein MADS2 
 nta-r.1   107816782   MADS-box protein 04g005320-like 
 osa-u.5   4347517   MADS-box transcription factor 8-like 
 osa-u.5   4346134   MADS-box transcription factor 7-like 
 zma-u.5   100415938   uncharacterized LOC100415938 
 zma-u.5   542043   MADS6 
 tae-r.2   123156477   MADS-box transcription factor 7 
 tae-r.2   123151806   MADS-box transcription factor 7 
 tae-r.2   123104312   MADS-box transcription factor 8 
 sbi-r.1   8058971   MADS-box transcription factor 8 
 sbi-r.1   8060611   MADS-box transcription factor 7 
 bdi-r.1   100844294   MADS-box transcription factor 7-like 
 bdi-r.1   100843405   MADS-box transcription factor 8 

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Top 50 coexpressed genes to 103829078 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103829078 (bra-r.6 coexpression data)

CoexMap"103829078"


braLOC103829078 | Entrez gene ID : 103829078    
Species bra bna ath ghi cit gma vvi sly nta osa zma tae sbi bdi sot cre ppo mtr hvu
Paralog 3 3 3 3 3 3 3 1 2 2 2 3 2 2 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (248 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (391 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (478 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
Protein XP_009102994.1 [sequence] [blastp]
XP_009102995.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_009102994.1)
nucl 10  (predict for XP_009102995.1)
Subcellular
localization
TargetP
other 8,  mito 5  (predict for XP_009102994.1)
other 8,  mito 5  (predict for XP_009102995.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103829078
bra-r.6
for
103839053
bra-r.6
for
103835412
bna-r.1
for
106433239
bna-r.1
for
125580827
bna-r.1
for
111198100
ath-u.5
for
SEP2
ath-u.5
for
SEP3
ath-u.5
for
SEP1
ghi-r.1
for
107911542
ghi-r.1
for
107893809
ghi-r.1
for
107899219
cit-r.1
for
102611482
cit-r.1
for
102620094
cit-r.1
for
102615242
gma-u.5
for
100786066
gma-u.5
for
100811049
gma-u.5
for
100778931
vvi-u.5
for
100251943
vvi-u.5
for
100232936
vvi-u.5
for
MADS4
sly-u.5
for
MADS1
nta-r.1
for
107797730
nta-r.1
for
107816782
osa-u.5
for
4347517
osa-u.5
for
4346134
zma-u.5
for
100415938
zma-u.5
for
542043
tae-r.2
for
123156477
tae-r.2
for
123151806
tae-r.2
for
123104312
sbi-r.1
for
8058971
sbi-r.1
for
8060611
bdi-r.1
for
100844294
bdi-r.1
for
100843405


Ortholog ID: 747
Species bra bra bra bna bna bna ath ath ath ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi sly nta nta nta osa osa zma zma tae tae tae sbi sbi bdi bdi
Symbol LOC103839053 LOC103835412 LOC103856162 LOC125580827 LOC106425408 LOC106382868 SEP2 SEP3 SEP1 LOC107893809 LOC107909691 LOC107886377 LOC102611482 LOC102620094 LOC102618932 LOC100811049 MADS28 LOC100794429 LOC100251943 MADS4 MADS2 TM29 LOC107820803 LOC107773468 LOC142181159 LOC4347517 LOC4346134 LOC542043 LOC542506 LOC123104312 LOC780637 LOC100137001 LOC8058971 LOC8060611 LOC100844294 LOC100843405
Function* agamous-like MADS-box protein AGL9 homolog agamous-like MADS-box protein AGL9 homolog developmental protein SEPALLATA 1 developmental protein SEPALLATA 2-like agamous-like MADS-box protein AGL9 homolog developmental protein SEPALLATA 2 K-box region and MADS-box transcription factor family protein K-box region and MADS-box transcription factor family protein K-box region and MADS-box transcription factor family protein agamous-like MADS-box protein MADS2 agamous-like MADS-box protein MADS2 agamous-like MADS-box protein AGL9 homolog agamous-like MADS-box protein MADS2 agamous-like MADS-box protein MADS2 agamous-like MADS-box protein AGL9 homolog agamous-like MADS-box protein MADS2 MADS transcription factor agamous-like MADS-box protein MADS4 agamous-like MADS-box protein MADS2 MADS-box protein 4 MADS-box protein 2 developmental protein SEPALLATA 1-like MADS-box protein 04g005320 agamous-like MADS-box protein AGL9 homolog agamous-like MADS-box protein AGL9 homolog MADS-box transcription factor 8-like MADS-box transcription factor 7-like MADS6 MADS27 MADS-box transcription factor 8 MADS-box transcription factor 7 MADS-box transcription factor 8 MADS-box transcription factor 8 MADS-box transcription factor 7 MADS-box transcription factor 7-like MADS-box transcription factor 8
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04626 Plant-pathogen interaction 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00620 Pyruvate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04082 Neuroactive ligand signaling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
bdi00100 Steroid biosynthesis 2
bdi00909 Sesquiterpenoid and triterpenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103839053 103835412 103856162 125580827 106425408 106382868 821151 839040 831436 107893809 107909691 107886377 102611482 102620094 102618932 100811049 547686 100794429 100251943 100232869 100232867 543770 107820803 107773468 142181159 4347517 4346134 542043 542506 123104312 780637 100137001 8058971 8060611 100844294 100843405
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