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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103847806   transcription factor bHLH94 
 bra-r.6   103830799   transcription factor bHLH96 
 bra-r.6   103831728   transcription factor bHLH96 
 bna-r.1   106392145   transcription factor bHLH96-like 
 bna-r.1   111202081   transcription factor bHLH94-like 
 bna-r.1   106368402   transcription factor bHLH94-like 
 ath-u.5   AT1G22490   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT1G72210   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ghi-r.1   107899123   transcription factor bHLH94 
 ghi-r.1   107894508   transcription factor bHLH94 
 ghi-r.1   107887742   transcription factor bHLH94 
 cit-r.1   102623040   transcription factor bHLH96 
 gma-u.5   100777413   transcription factor bHLH94 
 gma-u.5   100779213   transcription factor bHLH96 
 gma-u.5   100782243   transcription factor bHLH94 
 vvi-u.5   100261443   transcription factor bHLH94 
 vvi-u.5   100259155   transcription factor bHLH96 
 ppo-u.5   18098837   transcription factor bHLH94 
 ppo-u.5   7473872   transcription factor bHLH94 
 mtr-u.5   11429781   transcription factor bHLH96 
 mtr-u.5   11431242   transcription factor bHLH94 
 mtr-u.5   11410745   transcription factor bHLH94 
 sly-u.5   101264779   transcription factor bHLH96-like 
 sly-u.5   101268467   transcription factor bHLH94-like 
 sot-r.1   102592853   transcription factor bHLH94-like 
 sot-r.1   102594599   transcription factor bHLH96-like 
 sot-r.1   102584856   transcription factor bHLH96-like 
 nta-r.1   107778921   transcription factor bHLH94-like 
 nta-r.1   107767933   transcription factor bHLH96-like 
 nta-r.1   107807804   transcription factor bHLH96 
 osa-u.5   9267272   transcription factor bHLH94 
 osa-u.5   4348490   transcription factor bHLH96 
 osa-u.5   4331887   transcription factor bHLH96 
 zma-u.5   100280340   uncharacterized LOC100280340 
 zma-u.5   100285428   uncharacterized LOC100285428 
 tae-r.2   123098719   transcription factor bHLH96 
 hvu-r.1   123447165   transcription factor bHLH96-like 
 bdi-r.1   100837512   transcription factor bHLH94 

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Top 50 coexpressed genes to 103847806 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103847806 (bra-r.6 coexpression data)

CoexMap"103829328"


braLOC103829328 | Entrez gene ID : 103829328    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu bdi cre sbi
Paralog 3 3 2 3 1 3 2 2 3 2 3 3 3 2 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (676 genes)  IEA  
GO CC
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (391 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (478 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
Protein XP_009103235.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  cyto 1  (predict for XP_009103235.1)
Subcellular
localization
TargetP
other 8  (predict for XP_009103235.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103847806
bra-r.6
for
103830799
bra-r.6
for
103831728
bna-r.1
for
106392145
bna-r.1
for
111202081
bna-r.1
for
106368402
ath-u.5
for
AT1G22490
ath-u.5
for
AT1G72210
ghi-r.1
for
107899123
ghi-r.1
for
107894508
ghi-r.1
for
107887742
cit-r.1
for
102623040
gma-u.5
for
100777413
gma-u.5
for
100779213
gma-u.5
for
100782243
vvi-u.5
for
100261443
vvi-u.5
for
100259155
ppo-u.5
for
18098837
ppo-u.5
for
7473872
mtr-u.5
for
11429781
mtr-u.5
for
11431242
mtr-u.5
for
11410745
sly-u.5
for
101264779
sly-u.5
for
101268467
sot-r.1
for
102592853
sot-r.1
for
102594599
sot-r.1
for
102584856
nta-r.1
for
107778921
nta-r.1
for
107767933
nta-r.1
for
107807804
osa-u.5
for
9267272
osa-u.5
for
4348490
osa-u.5
for
4331887
zma-u.5
for
100280340
zma-u.5
for
100285428
tae-r.2
for
123098719
hvu-r.1
for
123447165
bdi-r.1
for
100837512


Ortholog ID: 1216
Species bra bra bna bna bna ath ath ghi ghi cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot sot nta nta nta osa osa osa zma zma tae hvu sbi bdi
Symbol LOC103830799 LOC103835698 LOC111202081 LOC106354199 LOC106454793 AT1G22490 AT1G72210 LOC107905077 LOC107951390 LOC102623040 LOC100805420 LOC100811408 LOC100789380 LOC100261443 LOC100259155 LOC18098837 LOC7490193 LOC11431242 LOC11410745 LOC101264779 LOC101268467 LOC102592853 LOC102594599 LOC102584856 LOC107807804 LOC107777889 LOC107799333 LOC9267272 LOC4348490 LOC4331887 LOC100280340 LOC103631833 LOC123098719 LOC123447165 LOC8081994 LOC100837512
Function* transcription factor bHLH96 transcription factor bHLH94 transcription factor bHLH94-like transcription factor bHLH96 transcription factor bHLH94 basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH96 transcription factor bHLH96 transcription factor bHLH96 transcription factor bHLH94 transcription factor bHLH96-like transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH96 transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH96-like transcription factor bHLH94-like transcription factor bHLH94-like transcription factor bHLH96-like transcription factor bHLH96-like transcription factor bHLH96 transcription factor bHLH94-like transcription factor bHLH94 transcription factor bHLH94 transcription factor bHLH96 transcription factor bHLH96 uncharacterized LOC100280340 transcription factor bHLH96 transcription factor bHLH96 transcription factor bHLH96-like transcription factor bHLH96 transcription factor bHLH94
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00910 Nitrogen metabolism 3
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 3
mtr04981 Folate transport and metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04141 Protein processing in endoplasmic reticulum 3
sot03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00920 Sulfur metabolism 4
sot01320 Sulfur cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 3
nta04075 Plant hormone signal transduction 2
nta00770 Pantothenate and CoA biosynthesis 2
nta01240 Biosynthesis of cofactors 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta01240 Biosynthesis of cofactors 2
nta03083 Polycomb repressive complex 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta01240 Biosynthesis of cofactors 2
nta03083 Polycomb repressive complex 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04016 MAPK signaling pathway - plant 3
osa04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 3
tae04981 Folate transport and metabolism 3
tae00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103830799 103835698 111202081 106354199 106454793 838855 843553 107905077 107951390 102623040 100805420 100811408 100789380 100261443 100259155 18098837 7490193 11431242 11410745 101264779 101268467 102592853 102594599 102584856 107807804 107777889 107799333 9267272 4348490 4331887 100280340 103631833 123098719 123447165 8081994 100837512
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