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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103838884   agamous-like MADS-box protein AGL11 
 bra-r.6   103856965   floral homeotic protein AGAMOUS 
 bna-r.1   106428192   agamous-like MADS-box protein AGL1 
 bna-r.1   106436444   agamous-like MADS-box protein AGL11 
 ath-u.5   AG   K-box region and MADS-box transcription factor family protein 
 ath-u.5   STK   K-box region and MADS-box transcription factor family protein 
 ghi-r.1   107925196   floral homeotic protein AGAMOUS-like 
 ghi-r.1   107914052   agamous-like MADS-box protein AGL11 
 ghi-r.1   107904906   agamous-like MADS-box protein AGL11 
 cit-r.1   102620453   agamous-like MADS-box protein AGL11 
 cit-r.1   102617808   agamous-like MADS-box protein MADS1 
 gma-u.5   100782733   agamous-like MADS-box protein MADS1 
 gma-u.5   AGL11   MADS domain transporter AGL11 
 gma-u.5   100776263   floral homeotic protein AGAMOUS-like 
 vvi-u.5   MADS1   MAD-box transcripion factor 
 vvi-u.5   MADS5   MADS-box protein 5 
 vvi-u.5   AG   agamous 
 sly-u.5   TAGL1   TAGL1 transcription factor 
 sly-u.5   AG1   floral homeotic protein AGAMOUS 
 sot-r.1   102586087   floral homeotic protein AGAMOUS 
 nta-r.1   107777063   agamous-like MADS-box protein AGL11 
 osa-u.5   4338067   MADS-box transcription factor 58-like 
 osa-u.5   4324888   MADS-box transcription factor 21-like 
 zma-u.5   100037764   AGAMOUS-like protein 
 zma-u.5   542039   MADS-box transcription factor 21 
 zma-u.5   542244   homologue of Arabidopsis gene AGAMOUS 
 tae-r.2   123041886   MADS-box transcription factor 58 
 tae-r.2   123077697   MADS-box transcription factor 3 
 tae-r.2   123169989   MADS-box transcription factor 21 
 sbi-r.1   110430121   MADS-box transcription factor 3-like 
 sbi-r.1   8080509   MADS-box transcription factor 3 
 bdi-r.1   100841720   MADS-box transcription factor 3 
 bdi-r.1   100824190   MADS-box transcription factor 58-like 

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Top 50 coexpressed genes to 103838884 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103838884 (bra-r.6 coexpression data)

CoexMap"103830183"


braLOC103830183 | Entrez gene ID : 103830183    
Species bra bna ath ghi cit gma vvi sly sot nta osa zma tae sbi bdi mtr hvu ppo cre
Paralog 2 2 2 3 2 3 3 2 1 1 2 3 3 2 2 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (248 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (391 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (478 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
Protein XP_009104172.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_009104172.1)
Subcellular
localization
TargetP
other 9  (predict for XP_009104172.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103838884
bra-r.6
for
103856965
bna-r.1
for
106428192
bna-r.1
for
106436444
ath-u.5
for
AG
ath-u.5
for
STK
ghi-r.1
for
107925196
ghi-r.1
for
107914052
ghi-r.1
for
107904906
cit-r.1
for
102620453
cit-r.1
for
102617808
gma-u.5
for
100782733
gma-u.5
for
AGL11
gma-u.5
for
100776263
vvi-u.5
for
MADS1
vvi-u.5
for
MADS5
vvi-u.5
for
AG
sly-u.5
for
TAGL1
sly-u.5
for
AG1
sot-r.1
for
102586087
nta-r.1
for
107777063
osa-u.5
for
4338067
osa-u.5
for
4324888
zma-u.5
for
100037764
zma-u.5
for
542039
zma-u.5
for
542244
tae-r.2
for
123041886
tae-r.2
for
123077697
tae-r.2
for
123169989
sbi-r.1
for
110430121
sbi-r.1
for
8080509
bdi-r.1
for
100841720
bdi-r.1
for
100824190


Ortholog ID: 775
Species bra bra bra bna bna bna ath ath ghi ghi ghi cit cit gma gma gma vvi vvi vvi sly sly sly nta osa osa osa zma zma zma tae tae tae sbi sbi bdi bdi
Symbol LOC103856965 LOC103861026 LOC103866661 LOC106428192 LOC106353173 LOC106397223 STK SHP1 LOC107914052 LOC107904906 LOC107959674 LOC102620453 LOC102622291 AGL11 LOC100776263 LOC100808734 MADS1 MADS5 AG TAGL1 AG1 MBP3 LOC107777063 LOC4338067 LOC4324888 LOC9271572 LOC542039 LOC542244 LOC542037 LOC100136964 LOC100136965 LOC100136998 LOC110430121 LOC8080509 LOC100841720 LOC100824190
Function* floral homeotic protein AGAMOUS floral homeotic protein AGAMOUS agamous-like MADS-box protein AGL5 agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL11 K-box region and MADS-box transcription factor family protein K-box region and MADS-box transcription factor family protein agamous-like MADS-box protein AGL11 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 MADS domain transporter AGL11 floral homeotic protein AGAMOUS-like agamous-like MADS-box protein MADS1 MAD-box transcripion factor MADS-box protein 5 agamous TAGL1 transcription factor floral homeotic protein AGAMOUS agamous-like MADS-box protein MBP3 agamous-like MADS-box protein AGL11 MADS-box transcription factor 58-like MADS-box transcription factor 21-like MADS-box transcription factor 3-like MADS-box transcription factor 21 homologue of Arabidopsis gene AGAMOUS Agamous-like MADS-box protein AGL5 MADS-box transcription factor 21 MADS-box transcription factor 3 MADS-box transcription factor 21 MADS-box transcription factor 3-like MADS-box transcription factor 3 MADS-box transcription factor 3 MADS-box transcription factor 58-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00941 Flavonoid biosynthesis 3
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00640 Propanoate metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00062 Fatty acid elongation 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00010 Glycolysis / Gluconeogenesis 2
zma00053 Ascorbate and aldarate metabolism 2
zma00071 Fatty acid degradation 2
zma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00940 Phenylpropanoid biosynthesis 2
bdi00941 Flavonoid biosynthesis 2
bdi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103856965 103861026 103866661 106428192 106353173 106397223 826586 825047 107914052 107904906 107959674 102620453 102622291 100301905 100776263 100808734 100232864 100232870 100261787 543841 543840 101249093 107777063 4338067 4324888 9271572 542039 542244 542037 100136964 100136965 100136998 110430121 8080509 100841720 100824190
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