ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103830748	organelle RRM domain-containing protein 6, chloroplastic
bra-r.6	103868326	glycine-rich RNA-binding protein 2, mitochondrial
bra-r.6	103846048	glycine-rich RNA-binding protein 10
bra-r.6	103864290	glycine-rich RNA-binding protein GRP2A
bna-r.1	125605193	glycine-rich RNA-binding protein 2, mitochondrial-like
bna-r.1	106381370	glycine-rich RNA-binding protein 5, mitochondrial-like
bna-r.1	106381665	organelle RRM domain-containing protein 6, chloroplastic-like
ath-u.5	CCR1	cold, circadian rhythm, and RNA binding 1
ath-u.5	GR-RBP5	glycine-rich RNA-binding protein 5
ath-u.5	AT1G73530	RNA-binding (RRM/RBD/RNP motifs) family protein
ghi-r.1	107929711	small RNA-binding protein 11, chloroplastic
ghi-r.1	107928749	glycine-rich RNA-binding protein GRP1A
ghi-r.1	107928000	glycine-rich RNA-binding protein GRP2A
cit-r.1	102625620	glycine-rich RNA-binding protein 2, mitochondrial
cit-r.1	102623019	glycine-rich RNA-binding protein 2, mitochondrial
cit-r.1	102620823	small RNA-binding protein 11, chloroplastic-like
gma-u.5	100796704	RNA recognition motif-containing protein
gma-u.5	112998378	glycine-rich RNA-binding protein GRP1A-like
gma-u.5	100799124	heterogeneous nuclear ribonucleoprotein D-like
vvi-u.5	100853676	glycine-rich RNA-binding protein GRP2A
vvi-u.5	100263981	small RNA-binding protein 11, chloroplastic
vvi-u.5	100854881	small RNA-binding protein 11, chloroplastic
ppo-u.5	7485722	small RNA-binding protein 11, chloroplastic
ppo-u.5	7487102	glycine-rich RNA-binding protein 4, mitochondrial
mtr-u.5	11413936	glycine-rich RNA-binding protein GRP1A
mtr-u.5	11428326	glycine-rich RNA-binding protein 3, mitochondrial
mtr-u.5	11420057	glycine-rich RNA-binding protein GRP1A
sly-u.5	101266771	glycine-rich RNA-binding protein
sly-u.5	GRP1	glycine-rich RNA-binding protein-like
sly-u.5	101262262	glycine-rich RNA-binding protein
sot-r.1	102600363	glycine-rich RNA-binding protein-like
sot-r.1	102605902	glycine-rich RNA-binding protein 3, mitochondrial
nta-r.1	107827182	small RNA-binding protein 11, chloroplastic
nta-r.1	107800467	glycine-rich RNA-binding protein 2, mitochondrial-like
nta-r.1	107797091	uncharacterized LOC107797091
osa-u.5	4343831	glycine-rich RNA-binding protein 2, mitochondrial
osa-u.5	9269592	organelle RRM domain-containing protein 6, chloroplastic
osa-u.5	9266763	small RNA-binding protein 11, chloroplastic
zma-u.5	100191146	uncharacterized LOC100191146
zma-u.5	100194217	responsive to abscisic acid15
zma-u.5	100283722	uncharacterized LOC100283722
tae-r.2	123080303	glycine-rich RNA-binding protein 2, mitochondrial
tae-r.2	123063110	glycine-rich RNA-binding protein 2, mitochondrial
tae-r.2	123071960	glycine-rich RNA-binding protein 2, mitochondrial
hvu-r.1	123448995	organelle RRM domain-containing protein 6, chloroplastic-like
hvu-r.1	123452897	glycine-rich RNA-binding protein 2, mitochondrial-like
hvu-r.1	123445239	glycine-rich RNA-binding protein 2, mitochondrial-like
sbi-r.1	8079176	glycine-rich RNA-binding protein 4, mitochondrial
sbi-r.1	8060654	glycine-rich RNA-binding protein 8
sbi-r.1	8078726	glycine-rich RNA-binding protein 2, mitochondrial
bdi-r.1	100823193	glycine-rich RNA-binding protein 2, mitochondrial
bdi-r.1	100825748	glycine-rich RNA-binding protein 1
cre-r.1	CHLRE_01g032300v5	uncharacterized protein
cre-r.1	CHLRE_17g729150v5	uncharacterized protein
cre-r.1	CHLRE_09g392350v5	uncharacterized protein

Top 50 coexpressed genes to 103830748 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103830748 (bra-r.6 coexpression data)

CoexMap"103830748"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:1900871 [list] [network] chloroplast mRNA modification	(2 genes)	IEA
GO:0016554 [list] [network] cytidine to uridine editing	(20 genes)	IEA

GO CC

GO:0009507 [list] [network] chloroplast

(845 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1857 genes)

IEA

Protein

XP_009104806.1 [sequence] [blastp]
XP_033131143.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 2	(predict for XP_009104806.1)
chlo 8, nucl 1, cyto 1, mito 1, cyto_nucl 1	(predict for XP_033131143.1)

Subcellular
localization
TargetP

chlo 9	(predict for XP_009104806.1)
chlo 9	(predict for XP_033131143.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103830748	bra-r.6 for 103868326	bra-r.6 for 103846048	bra-r.6 for 103864290	bna-r.1 for 125605193	bna-r.1 for 106381370	bna-r.1 for 106381665	ath-u.5 for CCR1	ath-u.5 for GR-RBP5	ath-u.5 for AT1G73530	ghi-r.1 for 107929711	ghi-r.1 for 107928749	ghi-r.1 for 107928000	cit-r.1 for 102625620	cit-r.1 for 102623019	cit-r.1 for 102620823	gma-u.5 for 100796704	gma-u.5 for 112998378	gma-u.5 for 100799124	vvi-u.5 for 100853676	vvi-u.5 for 100263981	vvi-u.5 for 100854881	ppo-u.5 for 7485722	ppo-u.5 for 7487102	mtr-u.5 for 11413936	mtr-u.5 for 11428326	mtr-u.5 for 11420057	sly-u.5 for 101266771	sly-u.5 for GRP1	sly-u.5 for 101262262	sot-r.1 for 102600363	sot-r.1 for 102605902	nta-r.1 for 107827182	nta-r.1 for 107800467	nta-r.1 for 107797091	osa-u.5 for 4343831	osa-u.5 for 9269592	osa-u.5 for 9266763	zma-u.5 for 100191146	zma-u.5 for 100194217	zma-u.5 for 100283722	tae-r.2 for 123080303	tae-r.2 for 123063110	tae-r.2 for 123071960	hvu-r.1 for 123448995	hvu-r.1 for 123452897	hvu-r.1 for 123445239	sbi-r.1 for 8079176	sbi-r.1 for 8060654	sbi-r.1 for 8078726	bdi-r.1 for 100823193	bdi-r.1 for 100825748	cre-r.1 for CHLRE_01g032300v5	cre-r.1 for CHLRE_17g729150v5	cre-r.1 for CHLRE_09g392350v5

Ortholog

Ortholog ID: 75

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

glycine-rich RNA-binding protein 10

cold-inducible RNA-binding protein

organelle RRM domain-containing protein 6, chloroplastic

glycine-rich RNA-binding protein GRP1A

glycine-rich RNA-binding protein 3, mitochondrial

RNA binding (RRM/RBD/RNP motifs) family protein

RNA-binding (RRM/RBD/RNP motifs) family protein

small RNA-binding protein 11, chloroplastic

glycine-rich RNA-binding protein GRP1A

glycine-rich RNA-binding protein 2, mitochondrial

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 2, mitochondrial-like

RNA recognition motif-containing protein

glycine-rich RNA-binding protein 2

putative glycine-rich RNA binding protein

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 6, chloroplastic

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 6, chloroplastic

small RNA-binding protein 11, chloroplastic

glycine-rich RNA-binding protein 2, mitochondrial

small RNA-binding protein 11, chloroplastic

organelle RRM domain-containing protein 6, chloroplastic

glycine-rich RNA-binding protein 4, mitochondrial

glycine-rich RNA-binding protein 2, mitochondrial

glycine-rich RNA-binding protein 4, mitochondrial

glycine-rich RNA-binding protein

glycine-rich RNA-binding protein 2, mitochondrial-like

glycine-rich RNA-binding protein 3, mitochondrial-like

glycine-rich RNA-binding protein 2, mitochondrial-like

glycine-rich RNA-binding protein-like

glycine-rich RNA-binding protein 2, mitochondrial

small RNA-binding protein 11, chloroplastic

glycine-rich RNA-binding protein blt801

uncharacterized LOC542725

Glycine-rich RNA-binding protein 3 mitochondrial

glycine-rich RNA-binding protein 7

glycine-rich RNA-binding protein 2, mitochondrial

glycine-rich RNA-binding protein

organelle RRM domain-containing protein 6, chloroplastic

loricrin-like

glycine-rich RNA-binding protein blt801-like

glycine-rich RNA-binding protein-like

glycine-rich RNA-binding protein 4, mitochondrial

small RNA-binding protein 11, chloroplastic

glycine-rich RNA-binding protein 4, mitochondrial-like

glycine-rich RNA-binding protein 4, mitochondrial

glycine-rich RNA-binding protein blt801

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna04626	Plant-pathogen interaction	4
bna03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2
ath03040	Spliceosome	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00100	Steroid biosynthesis	4
ghi00940	Phenylpropanoid biosynthesis	3
ghi03013	Nucleocytoplasmic transport	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi00905	Brassinosteroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo03040	Spliceosome	3
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5
mtr03008	Ribosome biogenesis in eukaryotes	4
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03040	Spliceosome	3
mtr03420	Nucleotide excision repair	2
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	7
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03008	Ribosome biogenesis in eukaryotes	3
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	15
nta03008	Ribosome biogenesis in eukaryotes	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma03010	Ribosome	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	15
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	5
tae03420	Nucleotide excision repair	5
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	4
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04145	Phagosome	3
sbi04517	IgSF CAM signaling	3
sbi04814	Motor proteins	3
sbi00520	Amino sugar and nucleotide sugar metabolism	2
sbi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	8
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	7

Expression

Expression pattern

Entrez Gene ID^*

103835157

103851541

103852851

106365965

106439949

830508

819991

107896330

107960836

107952135

102623019

102608923

102627364

100796704

100777821

100305467

100263981

100854881

100246039

7485722

7485193

18109442

11436305

25499413

25497346

101257264

101254436

101245474

102581514

102587142

102587662

107787039

107759364

142161681

4343831

9266763

4352279

542725

100191295

100284207

123072018

123134221

123097872

123425384

123400027

123403078

8079176

8075292

110434104

100840808

100842305

5715399

5720095

5727272

The preparation time of this page was 0.2 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	2	3	3	2	3	3	3	3	3	3	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103830748 (bra-r.6 coexpression data)

Top 50 enrichment test to 103830748 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**