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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103831354   agamous-like MADS-box protein AGL30 
 bra-r.6   103839428   agamous-like MADS-box protein AGL30 
 bra-r.6   117125933   agamous-like MADS-box protein AGL65 
 bna-r.1   106351441   agamous-like MADS-box protein AGL65 
 ath-u.5   AGL30   AGAMOUS-like 30 
 ath-u.5   AGL65   AGAMOUS-like 65 
 ghi-r.1   107953508   agamous-like MADS-box protein AGL65 
 ghi-r.1   107887260   agamous-like MADS-box protein AGL30 
 ghi-r.1   107926708   agamous-like MADS-box protein AGL65 
 cit-r.1   102630847   agamous-like MADS-box protein AGL65 
 cit-r.1   102611222   agamous-like MADS-box protein AGL30 
 gma-u.5   100811765   agamous-like MADS-box protein AGL65 
 vvi-u.5   100250157   agamous-like MADS-box protein AGL65 
 ppo-u.5   7492930   agamous-like MADS-box protein AGL30 
 mtr-u.5   25493822   agamous-like MADS-box protein AGL65 
 sly-u.5   101260221   agamous-like MADS-box protein AGL65 
 sot-r.1   102604492   agamous-like MADS-box protein AGL65 
 nta-r.1   107774934   agamous-like MADS-box protein AGL65 
 nta-r.1   107811420   agamous-like MADS-box protein AGL65 

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Top 50 coexpressed genes to 103831354 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103831354 (bra-r.6 coexpression data)

CoexMap"103831354"


braLOC103831354 | Entrez gene ID : 103831354    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa bdi tae zma sbi hvu cre
Paralog 3 1 2 3 2 1 1 1 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (248 genes)  IEA  
GO CC
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (391 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (478 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
Protein XP_033130239.1 [sequence] [blastp]
XP_033130240.1 [sequence] [blastp]
XP_033130241.1 [sequence] [blastp]
XP_033130242.1 [sequence] [blastp]
XP_033130243.1 [sequence] [blastp]
XP_033130244.1 [sequence] [blastp]
XP_033130245.1 [sequence] [blastp]
XP_033130246.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  plas 1,  golg_plas 1,  golg 1  (predict for XP_033130239.1)
nucl 6,  plas 1,  golg_plas 1,  golg 1  (predict for XP_033130240.1)
nucl 6,  plas 1,  golg_plas 1,  golg 1  (predict for XP_033130241.1)
nucl 6,  plas 1,  golg_plas 1,  golg 1  (predict for XP_033130242.1)
nucl 6,  plas 1,  golg_plas 1,  golg 1,  chlo 1,  E.R. 1  (predict for XP_033130243.1)
nucl 6,  plas 1,  golg_plas 1,  golg 1,  chlo 1,  E.R. 1  (predict for XP_033130244.1)
nucl 6,  chlo 1,  golg_plas 1,  plas 1,  golg 1  (predict for XP_033130245.1)
nucl 6,  chlo 1,  golg_plas 1,  plas 1,  golg 1  (predict for XP_033130246.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for XP_033130239.1)
other 8,  mito 3  (predict for XP_033130240.1)
other 8,  mito 3  (predict for XP_033130241.1)
other 8,  mito 3  (predict for XP_033130242.1)
other 8,  mito 3  (predict for XP_033130243.1)
other 8,  mito 3  (predict for XP_033130244.1)
other 8,  mito 3  (predict for XP_033130245.1)
other 8,  mito 3  (predict for XP_033130246.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103831354
bra-r.6
for
103839428
bra-r.6
for
117125933
bna-r.1
for
106351441
ath-u.5
for
AGL30
ath-u.5
for
AGL65
ghi-r.1
for
107953508
ghi-r.1
for
107887260
ghi-r.1
for
107926708
cit-r.1
for
102630847
cit-r.1
for
102611222
gma-u.5
for
100811765
vvi-u.5
for
100250157
ppo-u.5
for
7492930
mtr-u.5
for
25493822
sly-u.5
for
101260221
sot-r.1
for
102604492
nta-r.1
for
107774934
nta-r.1
for
107811420


Ortholog ID: 3073
Species bra bra bna ath ath ghi ghi ghi cit cit vvi ppo mtr sly sot nta nta
Symbol LOC103831354 LOC117125933 LOC106369323 AGL30 AGL65 LOC107918859 LOC107934270 LOC107946522 LOC102630847 LOC102611222 LOC100250157 LOC7492930 LOC25493822 LOC101260221 LOC102604492 LOC107774934 LOC107811420
Function* agamous-like MADS-box protein AGL30 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL30 AGAMOUS-like 30 AGAMOUS-like 65 agamous-like MADS-box protein AGL30 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL30 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL30 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL65 agamous-like MADS-box protein AGL65
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
bna00030 Pentose phosphate pathway 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00730 Thiamine metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 3
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo04136 Autophagy - other 2
ppo04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 2
mtr00780 Biotin metabolism 2
mtr01212 Fatty acid metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00196 Photosynthesis - antenna proteins 8
sly04712 Circadian rhythm - plant 2
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 8
nta00460 Cyanoamino acid metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00910 Nitrogen metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00196 Photosynthesis - antenna proteins 7
nta00511 Other glycan degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103831354 117125933 106369323 814835 838457 107918859 107934270 107946522 102630847 102611222 100250157 7492930 25493822 101260221 102604492 107774934 107811420
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