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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103834109   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 bna-r.1   106375291   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 bna-r.1   106434728   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 ath-u.5   MRL1   Pentatricopeptide repeat (PPR) superfamily protein 
 ghi-r.1   107893900   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 ghi-r.1   107920542   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 cit-r.1   102616378   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 gma-u.5   100814164   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 gma-u.5   100788743   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 vvi-u.5   100250266   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 ppo-u.5   7453625   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 mtr-u.5   11438113   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 sly-u.5   101253333   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 sot-r.1   102579803   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 nta-r.1   107771716   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 nta-r.1   107803137   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 osa-u.5   4348208   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 zma-u.5   103638582   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 tae-r.2   123042998   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 tae-r.2   123180742   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 tae-r.2   123117400   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 hvu-r.1   123428443   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 sbi-r.1   8155282   pentatricopeptide repeat-containing protein MRL1, chloroplastic 
 bdi-r.1   100842158   pentatricopeptide repeat-containing protein MRL1, chloroplastic 

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Top 50 coexpressed genes to 103834109 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103834109 (bra-r.6 coexpression data)

CoexMap""


braLOC103834109 | Entrez gene ID : 103834109    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function pentatricopeptide repeat-containing protein MRL1, chloroplastic
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009108450.1 [sequence] [blastp]
XP_009108512.1 [sequence] [blastp]
XP_009108581.1 [sequence] [blastp]
XP_033139720.1 [sequence] [blastp]
XP_033139733.1 [sequence] [blastp]
XP_033139735.1 [sequence] [blastp]
XP_033139736.1 [sequence] [blastp]
XP_033139741.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_009108450.1)
chlo 9  (predict for XP_009108512.1)
chlo 6,  mito 1,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  cyto_mito 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_009108581.1)
chlo 9  (predict for XP_033139720.1)
chlo 9  (predict for XP_033139733.1)
chlo 9  (predict for XP_033139735.1)
chlo 9  (predict for XP_033139736.1)
chlo 6,  nucl 1,  cyto 1,  mito 1,  plas 1,  cysk_nucl 1,  mito_plas 1,  cyto_plas 1  (predict for XP_033139741.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_009108450.1)
chlo 8  (predict for XP_009108512.1)
chlo 8  (predict for XP_009108581.1)
chlo 8  (predict for XP_033139720.1)
chlo 8  (predict for XP_033139733.1)
chlo 8  (predict for XP_033139735.1)
chlo 8  (predict for XP_033139736.1)
chlo 8  (predict for XP_033139741.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103834109
bna-r.1
for
106375291
bna-r.1
for
106434728
ath-u.5
for
MRL1
ghi-r.1
for
107893900
ghi-r.1
for
107920542
cit-r.1
for
102616378
gma-u.5
for
100814164
gma-u.5
for
100788743
vvi-u.5
for
100250266
ppo-u.5
for
7453625
mtr-u.5
for
11438113
sly-u.5
for
101253333
sot-r.1
for
102579803
nta-r.1
for
107771716
nta-r.1
for
107803137
osa-u.5
for
4348208
zma-u.5
for
103638582
tae-r.2
for
123042998
tae-r.2
for
123180742
tae-r.2
for
123117400
hvu-r.1
for
123428443
sbi-r.1
for
8155282
bdi-r.1
for
100842158

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Ortholog ID: 10254
Species bra bna bna ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC103834109 LOC106375291 LOC106434728 MRL1 LOC107893900 LOC107920542 LOC102616378 LOC100814164 LOC100788743 LOC100250266 LOC7453625 LOC11438113 LOC101253333 LOC102579803 LOC107771716 LOC107803137 LOC4348208 LOC103638582 LOC123042998 LOC123180742 LOC123117400 LOC123428443 LOC8155282 LOC100842158
Function* pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic pentatricopeptide repeat-containing protein MRL1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 3
bna00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr00860 Porphyrin metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly00230 Purine metabolism 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00061 Fatty acid biosynthesis 2
nta01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 4
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 2
hvu03060 Protein export 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103834109 106375291 106434728 829635 107893900 107920542 102616378 100814164 100788743 100250266 7453625 11438113 101253333 102579803 107771716 107803137 4348208 103638582 123042998 123180742 123117400 123428443 8155282 100842158
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