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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103834274   agamous-like MADS-box protein AGL19 
 bra-r.6   103866913   MADS-box protein SOC1 
 bra-r.6   103866224   MADS-box protein SOC1 
 bra-r.6   103861349   agamous-like MADS-box protein AGL19 
 bna-r.1   111209706   MADS-box protein AGL42-like 
 bna-r.1   125593991   MADS-box protein AGL42-like 
 ath-u.5   AGL42   AGAMOUS-like 42 
 ghi-r.1   107946987   agamous-like MADS-box protein AGL19 
 ghi-r.1   107957281   MADS-box protein SOC1-like 
 ghi-r.1   107963688   agamous-like MADS-box protein AGL19 
 cit-r.1   102619676   truncated transcription factor CAULIFLOWER A-like 
 cit-r.1   102626103   agamous-like MADS-box protein AGL19 
 cit-r.1   102577938   SOC1-like protein 2 
 gma-u.5   100782713   agamous-like MADS-box protein AGL19 
 gma-u.5   100816440   MADS-box protein SOC1 
 gma-u.5   100805260   agamous-like MADS-box protein AGL19-like 
 vvi-u.5   100268115   MADS-box protein AGL42 
 vvi-u.5   100252657   MADS-box transcription factor 15 
 vvi-u.5   100246102   agamous-like MADS-box protein AGL19 
 ppo-u.5   7488925   MADS-box protein SOC1 
 ppo-u.5   7494028   MADS-box protein SOC1 
 mtr-u.5   25493640   agamous-like MADS-box protein AGL19 
 mtr-u.5   25500990   MADS-box protein SOC1 
 sly-u.5   101244491   MADS-box protein AGL42-like 
 sly-u.5   101250432   agamous-like MADS-box protein AGL19 
 sot-r.1   102603784   MADS-box protein SOC1-like 
 sot-r.1   102601650   MADS-box protein SOC1-like 
 sot-r.1   107058273   MADS-box protein SOC1-like 
 nta-r.1   107780664   agamous-like MADS-box protein AGL19 
 nta-r.1   107767334   MADS-box protein SOC1-like 
 nta-r.1   107768182   MADS-box protein SOC1-like 
 osa-u.5   4349237   MADS-box transcription factor 56-like 
 osa-u.5   4331445   MADS-box transcription factor 50-like 
 osa-u.5   4327247   MADS-box transcription factor 51-like 
 zma-u.5   100382583   uncharacterized LOC100382583 
 zma-u.5   100279630   uncharacterized LOC100279630 
 zma-u.5   541985   MADS14 
 tae-r.2   123099036   MADS-box transcription factor 51 
 tae-r.2   123093767   MADS-box transcription factor 50 
 tae-r.2   123105975   MADS-box transcription factor 51 
 hvu-r.1   123445264   MADS-box transcription factor 51-like 
 hvu-r.1   123445268   MADS-box transcription factor 51-like 
 hvu-r.1   123403908   MADS-box protein SOC1-like 
 sbi-r.1   8085162   MADS-box protein SOC1 
 sbi-r.1   8079807   MADS-box transcription factor 51 
 sbi-r.1   110431745   MADS-box transcription factor 56-like 
 bdi-r.1   100823405   MADS-box transcription factor 51-like 
 bdi-r.1   100823796   MADS-box transcription factor 56-like 
 bdi-r.1   100824579   agamous-like MADS-box protein AGL14-like 
 cre-r.1   CHLRE_11g467577v5   uncharacterized protein 

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Top 50 coexpressed genes to 103834274 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103834274 (bra-r.6 coexpression data)

CoexMap"103834274"


braLOC103834274 | Entrez gene ID : 103834274    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 3 3 3 3 2 2 2 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (248 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (391 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (478 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
Protein XP_009108594.1 [sequence] [blastp]
XP_033132948.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  golg_plas 1  (predict for XP_009108594.1)
nucl 9,  chlo 1,  golg_plas 1  (predict for XP_033132948.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_009108594.1)
other 7,  mito 3  (predict for XP_033132948.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103834274
bra-r.6
for
103866913
bra-r.6
for
103866224
bra-r.6
for
103861349
bna-r.1
for
111209706
bna-r.1
for
125593991
ath-u.5
for
AGL42
ghi-r.1
for
107946987
ghi-r.1
for
107957281
ghi-r.1
for
107963688
cit-r.1
for
102619676
cit-r.1
for
102626103
cit-r.1
for
102577938
gma-u.5
for
100782713
gma-u.5
for
100816440
gma-u.5
for
100805260
vvi-u.5
for
100268115
vvi-u.5
for
100252657
vvi-u.5
for
100246102
ppo-u.5
for
7488925
ppo-u.5
for
7494028
mtr-u.5
for
25493640
mtr-u.5
for
25500990
sly-u.5
for
101244491
sly-u.5
for
101250432
sot-r.1
for
102603784
sot-r.1
for
102601650
sot-r.1
for
107058273
nta-r.1
for
107780664
nta-r.1
for
107767334
nta-r.1
for
107768182
osa-u.5
for
4349237
osa-u.5
for
4331445
osa-u.5
for
4327247
zma-u.5
for
100382583
zma-u.5
for
100279630
zma-u.5
for
541985
tae-r.2
for
123099036
tae-r.2
for
123093767
tae-r.2
for
123105975
hvu-r.1
for
123445264
hvu-r.1
for
123445268
hvu-r.1
for
123403908
sbi-r.1
for
8085162
sbi-r.1
for
8079807
sbi-r.1
for
110431745
bdi-r.1
for
100823405
bdi-r.1
for
100823796
bdi-r.1
for
100824579
cre-r.1
for
CHLRE_11g467577v5


Ortholog ID: 245
Species bra bna bna ath ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol SOC1 LOC106389254 LOC106440467 AGL14 LOC107957281 LOC107963688 LOC107908954 LOC102619676 LOC102577938 LOC102577939 LOC100816440 LOC100784678 LOC100807963 LOC100268115 LOC100246102 MADS8 LOC7494028 LOC18094432 LOC7482155 LOC25500990 LOC101244491 FYFL LOC544075 LOC102603784 LOC107058273 LOC102601314 LOC107776514 LOC107828738 LOC107816198 LOC4349237 LOC4327247 LOC107276190 LOC100279630 LOC541985 LOC103649797 LOC123093767 LOC100125729 LOC123051047 LOC123445264 LOC123445266 LOC110431745 LOC8077968 LOC8060808 LOC100824579 LOC100825614 LOC100826117 CHLRE_11g467577v5
Function* MADS-box protein SOC1-like MADS-box protein AGL42 agamous-like MADS-box protein AGL19 AGAMOUS-like 14 MADS-box protein SOC1-like agamous-like MADS-box protein AGL19 MADS-box protein SOC1 truncated transcription factor CAULIFLOWER A-like SOC1-like protein 2 SOC1-like protein 1 MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein AGL42 agamous-like MADS-box protein AGL19 MADS-box protein MADS-box protein SOC1 agamous-like MADS-box protein AGL19 MADS-box protein AGL42 MADS-box protein SOC1 MADS-box protein AGL42-like MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box protein SOC1-like MADS-box protein SOC1-like MADS-box protein SOC1 MADS-box protein SOC1 MADS-box protein SOC1-like MADS-box transcription factor 56-like MADS-box transcription factor 51-like MADS-box protein SOC1 uncharacterized LOC100279630 MADS14 MADS-box transcription factor 51 MADS-box transcription factor 50 MADS-box transcription factor 50 MADS-box transcription factor 56 MADS-box transcription factor 51-like MADS-box transcription factor 51-like MADS-box transcription factor 56-like MADS-box transcription factor 50 MADS-box transcription factor 51 agamous-like MADS-box protein AGL14-like MADS-box protein SOC1 MADS-box transcription factor 51 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi04016 MAPK signaling pathway - plant 2
vvi00910 Nitrogen metabolism 2
vvi01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 3
nta00941 Flavonoid biosynthesis 3
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00260 Glycine, serine and threonine metabolism 2
hvu00350 Tyrosine metabolism 2
hvu00360 Phenylalanine metabolism 2
hvu00410 beta-Alanine metabolism 2
hvu00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 5
sbi04075 Plant hormone signal transduction 5
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sbi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00190 Oxidative phosphorylation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103858179 106389254 106440467 826795 107957281 107963688 107908954 102619676 102577938 102577939 100816440 100784678 100807963 100268115 100246102 100232995 7494028 18094432 7482155 25500990 101244491 101266695 544075 102603784 107058273 102601314 107776514 107828738 107816198 4349237 4327247 107276190 100279630 541985 103649797 123093767 100125729 123051047 123445264 123445266 110431745 8077968 8060808 100824579 100825614 100826117 5726939
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