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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103835208   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 bra-r.6   103840392   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 bna-r.1   106361570   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 bna-r.1   106367271   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 bna-r.1   106439712   DNA-damage-repair/toleration protein DRT111, chloroplastic-like 
 ath-u.5   DRT111   D111/G-patch domain-containing protein 
 ghi-r.1   107930433   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 ghi-r.1   107925275   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 cit-r.1   102631423   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 gma-u.5   100805487   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 gma-u.5   100800998   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 vvi-u.5   100265303   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 ppo-u.5   7463792   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 ppo-u.5   7487570   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 mtr-u.5   11441386   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 sly-u.5   101263271   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 sot-r.1   102603413   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 nta-r.1   107780693   DNA-damage-repair/toleration protein 111-like 
 nta-r.1   107813967   DNA-damage-repair/toleration protein 111 
 osa-u.5   4323935   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 zma-u.5   100282621   splicing factor 45 
 zma-u.5   100283416   uncharacterized LOC100283416 
 tae-r.2   123077245   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 sbi-r.1   8071349   DNA-damage-repair/toleration protein DRT111, chloroplastic 
 cre-r.1   CHLRE_11g467591v5   uncharacterized protein 

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Top 50 coexpressed genes to 103835208 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103835208 (bra-r.6 coexpression data)

CoexMap"103835208"


braLOC103835208 | Entrez gene ID : 103835208    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae sbi cre bdi hvu
Paralog 2 3 1 2 1 2 1 2 1 1 1 2 1 2 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03040 [list] [network] Spliceosome (434 genes)
GO BP
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (31 genes)  IEA  
GO CC
GO:0071011 [list] [network] precatalytic spliceosome  (71 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
Protein XP_009109580.2 [sequence] [blastp]
XP_033132243.1 [sequence] [blastp]
XP_033132244.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_009109580.2)
chlo 6,  vacu 2,  nucl 1,  extr 1,  E.R. 1  (predict for XP_033132243.1)
chlo 5,  vacu 2,  extr 1,  E.R._vacu 1  (predict for XP_033132244.1)
Subcellular
localization
TargetP
chlo 7,  other 5  (predict for XP_009109580.2)
scret 9  (predict for XP_033132243.1)
scret 9  (predict for XP_033132244.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103835208
bra-r.6
for
103840392
bna-r.1
for
106361570
bna-r.1
for
106367271
bna-r.1
for
106439712
ath-u.5
for
DRT111
ghi-r.1
for
107930433
ghi-r.1
for
107925275
cit-r.1
for
102631423
gma-u.5
for
100805487
gma-u.5
for
100800998
vvi-u.5
for
100265303
ppo-u.5
for
7463792
ppo-u.5
for
7487570
mtr-u.5
for
11441386
sly-u.5
for
101263271
sot-r.1
for
102603413
nta-r.1
for
107780693
nta-r.1
for
107813967
osa-u.5
for
4323935
zma-u.5
for
100282621
zma-u.5
for
100283416
tae-r.2
for
123077245
sbi-r.1
for
8071349
cre-r.1
for
CHLRE_11g467591v5


Ortholog ID: 10492
Species bra bra bna bna bna ath ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae sbi cre
Symbol LOC103835208 LOC103840392 LOC106361570 LOC106367271 LOC106439712 DRT111 LOC107930433 LOC107925275 LOC102631423 LOC100805487 LOC100800998 LOC100265303 LOC7463792 LOC7487570 LOC11441386 LOC101263271 LOC102603413 LOC107780693 LOC107813967 LOC4323935 LOC100282621 LOC100283416 LOC123077245 LOC8071349 CHLRE_11g467591v5
Function* DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic-like D111/G-patch domain-containing protein DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein 111-like DNA-damage-repair/toleration protein 111 DNA-damage-repair/toleration protein DRT111, chloroplastic splicing factor 45 uncharacterized LOC100283416 DNA-damage-repair/toleration protein DRT111, chloroplastic DNA-damage-repair/toleration protein DRT111, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04141 Protein processing in endoplasmic reticulum 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 2
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03015 mRNA surveillance pathway 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 10
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103835208 103840392 106361570 106367271 106439712 839927 107930433 107925275 102631423 100805487 100800998 100265303 7463792 7487570 11441386 101263271 102603413 107780693 107813967 4323935 100282621 100283416 123077245 8071349 66055218
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