ATTED-II : GeneCoexpression result

Species	Gene	Description
bra-r.6	103835784	transcription factor GTE4
ath-u.5	AT1G20670	DNA-binding bromodomain-containing protein
ath-u.5	AT1G76380	DNA-binding bromodomain-containing protein
gma-u.5	100811115	uncharacterized LOC100811115
gma-u.5	100783010	uncharacterized LOC100783010
vvi-u.5	100244510	uncharacterized LOC100244510
vvi-u.5	100245230	uncharacterized LOC100245230
ppo-u.5	7474571	uncharacterized LOC7474571
ppo-u.5	7474893	uncharacterized LOC7474893
ppo-u.5	7485641	uncharacterized LOC7485641
mtr-u.5	25490319	ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800
sly-u.5	101247829	uncharacterized LOC101247829
sly-u.5	101253085	uncharacterized LOC101253085
osa-u.5	4347782	uncharacterized LOC4347782
zma-u.5	100281438	uncharacterized LOC100281438
zma-u.5	103633143	bromodomain-containing protein 4

Annotation

functional annotation

KEGG

brp03082 [list] [network] ATP-dependent chromatin remodeling (96 genes)

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(6277 genes)

IEA

Protein

XP_009110217.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_009110217.1)

Subcellular
localization
TargetP

other 7

(predict for XP_009110217.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103835784	ath-u.5 for AT1G20670	ath-u.5 for AT1G76380	gma-u.5 for 100811115	gma-u.5 for 100783010	vvi-u.5 for 100244510	vvi-u.5 for 100245230	ppo-u.5 for 7474571	ppo-u.5 for 7474893	ppo-u.5 for 7485641	mtr-u.5 for 25490319	sly-u.5 for 101247829	sly-u.5 for 101253085	osa-u.5 for 4347782	zma-u.5 for 100281438	zma-u.5 for 103633143

Ortholog

Ortholog ID: 3279

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

bromodomain-containing protein 9

transcription factor GTE4

uncharacterized LOC106411387

DNA-binding bromodomain-containing protein

bromodomain-containing protein DDB_G0270170

bromodomain and WD repeat-containing protein 1

uncharacterized LOC102614471

uncharacterized LOC102619091

uncharacterized LOC100811115

uncharacterized LOC100783010

uncharacterized LOC100244510

uncharacterized LOC100245230

uncharacterized LOC7474571

uncharacterized LOC7485641

ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800

uncharacterized LOC101247829

uncharacterized LOC101253085

uncharacterized LOC102592615

uncharacterized LOC102600883

uncharacterized LOC107769129

uncharacterized LOC107767656

uncharacterized LOC4347782

uncharacterized LOC100281438

bromodomain-containing protein 4

bromodomain-containing protein 3

serine/arginine repetitive matrix protein 1

uncharacterized LOC123451862

uncharacterized LOC8074166

bromodomain-containing protein 7

uncharacterized LOC100827623

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	3
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	3
bra02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5
bna03420	Nucleotide excision repair	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	7
ghi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	4
ghi03082	ATP-dependent chromatin remodeling	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	2
gma00562	Inositol phosphate metabolism	2
gma04070	Phosphatidylinositol signaling system	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2
vvi03040	Spliceosome	2
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta00900	Terpenoid backbone biosynthesis	2
nta03082	ATP-dependent chromatin remodeling	2
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	2
nta03082	ATP-dependent chromatin remodeling	2
nta04075	Plant hormone signal transduction	2
nta00051	Fructose and mannose metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	5
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00071	Fatty acid degradation	2
bdi01212	Fatty acid metabolism	2
bdi04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

103832095

103872856

106440731

106411387

843970

838655

107910682

107920924

102614471

102619091

100811115

100783010

100244510

100245230

7474571

7485641

25490319

101247829

101253085

102592615

102600883

107769129

107767656

4347782

100281438

103633143

123113016

123122526

123451862

8074166

100832040

100827623

66056955

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 103835784 (bra-r.6 coexpression data)

Top 50 enrichment test to 103835784 (bra-r.6 coexpression data)


Species	bra	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	2	2	3	1	2	1	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103835784 (bra-r.6 coexpression data)

Top 50 enrichment test to 103835784 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**