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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G01100   60S acidic ribosomal protein family 
 ath-u.5   AT4G00810   60S acidic ribosomal protein family 
 gma-u.5   100791962   60S acidic ribosomal protein P1-3 
 gma-u.5   100785976   60S acidic ribosomal protein P1 
 gma-u.5   100305677   uncharacterized LOC100305677 
 vvi-u.5   100261912   large ribosomal subunit protein P1 
 vvi-u.5   100257825   large ribosomal subunit protein P1 
 vvi-u.5   100249556   large ribosomal subunit protein P1 
 ppo-u.5   7464304   60S acidic ribosomal protein P1 
 ppo-u.5   7464480   60S acidic ribosomal protein P1 
 ppo-u.5   7478800   60S acidic ribosomal protein P1 
 mtr-u.5   11441480   60S acidic ribosomal protein P1 
 mtr-u.5   11433356   60S acidic ribosomal protein P1-3 
 mtr-u.5   25500618   60S acidic ribosomal protein P1 
 sly-u.5   101249479   large ribosomal subunit protein P1 
 sly-u.5   101257793   large ribosomal subunit protein P1 
 sly-u.5   101247992   large ribosomal subunit protein P1-like 
 osa-u.5   4344516   large ribosomal subunit protein P1 
 zma-u.5   542719   acidic ribosomal protein P1a 
 zma-u.5   100282819   60S acidic ribosomal protein P1 

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Top 50 coexpressed genes to AT1G01100 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G01100 (ath-u.5 coexpression data)

CoexMap"103837064"


braLOC103837064 | Entrez gene ID : 103837064    
Species ath gma vvi ppo mtr sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 2 3 3 3 3 3 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03010 [list] [network] Ribosome (2036 genes)
GO BP
GO:0006414 [list] [network] translational elongation  (65 genes)  IEA  
GO:0002181 [list] [network] cytoplasmic translation  (136 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (240 genes)  IEA  
GO:0005840 [list] [network] ribosome  (658 genes)  IEA  
GO MF
GO:0030295 [list] [network] protein kinase activator activity  (53 genes)  IEA  
GO:0043021 [list] [network] ribonucleoprotein complex binding  (107 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (649 genes)  IEA  
Protein XP_009111636.1 [sequence] [blastp]
XP_018510211.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  cyto_plas 2,  extr 1,  nucl 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_009111636.1)
cyto 5,  chlo 3,  cysk 1,  cysk_nucl 1  (predict for XP_018510211.1)
Subcellular
localization
TargetP
other 7  (predict for XP_009111636.1)
other 7  (predict for XP_018510211.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT1G01100
ath-u.5
for
AT4G00810
gma-u.5
for
100791962
gma-u.5
for
100785976
gma-u.5
for
100305677
vvi-u.5
for
100261912
vvi-u.5
for
100257825
vvi-u.5
for
100249556
ppo-u.5
for
7464304
ppo-u.5
for
7464480
ppo-u.5
for
7478800
mtr-u.5
for
11441480
mtr-u.5
for
11433356
mtr-u.5
for
25500618
sly-u.5
for
101249479
sly-u.5
for
101257793
sly-u.5
for
101247992
osa-u.5
for
4344516
zma-u.5
for
542719
zma-u.5
for
100282819


Ortholog ID: 1212
Species bra bra bna bna ath ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC103844623 LOC103858814 LOC106370896 LOC106370899 AT5G47700 LOC107930166 LOC107930453 LOC102620783 LOC102611846 LOC100305677 LOC100785976 LOC100261912 LOC100257825 LOC7478800 LOC7464480 LOC11441480 LOC25486934 LOC101259584 LOC101257793 LOC102585385 LOC107802904 LOC4344516 LOC100282819 LOC542719 LOC123156517 LOC606341 LOC123407887 LOC8068570 LOC100839013 CHLRE_17g738300v5
Function* 60S acidic ribosomal protein P1-3 60S acidic ribosomal protein P1-2 60S acidic ribosomal protein P1-3-like 60S acidic ribosomal protein P1-3-like 60S acidic ribosomal protein family 60S acidic ribosomal protein P1 60S acidic ribosomal protein P1 60S acidic ribosomal protein P1-like 60S acidic ribosomal protein P1 uncharacterized LOC100305677 60S acidic ribosomal protein P1 large ribosomal subunit protein P1 large ribosomal subunit protein P1 60S acidic ribosomal protein P1 60S acidic ribosomal protein P1 60S acidic ribosomal protein P1 60S acidic ribosomal protein P1 large ribosomal subunit protein P1 large ribosomal subunit protein P1 60S acidic ribosomal protein P1-like uncharacterized LOC107802904 large ribosomal subunit protein P1 60S acidic ribosomal protein P1 acidic ribosomal protein P1a 60S acidic ribosomal protein P1 60S acidic ribosomal protein P1 60S acidic ribosomal protein P1-like 60S acidic ribosomal protein P1 60S acidic ribosomal protein P1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi03015 mRNA surveillance pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
ghi03060 Protein export 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 15
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 21
cre04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103844623 103858814 106370896 106370899 834821 107930166 107930453 102620783 102611846 100305677 100785976 100261912 100257825 7478800 7464480 11441480 25486934 101259584 101257793 102585385 107802904 4344516 100282819 542719 123156517 606341 123407887 8068570 100839013 5725138
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