ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103842507	uncharacterized LOC103842507
bra-r.6	103870811	uncharacterized LOC103870811
bna-r.1	BNAC07G47310D	uncharacterized BNAC07G47310D
bna-r.1	106360176	uncharacterized LOC106360176
bna-r.1	BNAA06G40720D	uncharacterized BNAA06G40720D
ath-u.5	AT2G21640	marker for oxidative stress response protein
ath-u.5	AT3G05570	dipeptide transport ATP-binding protein
ath-u.5	AT4G39235	uncharacterized protein
ghi-r.1	107919934	uncharacterized LOC107919934
ghi-r.1	107918524	uncharacterized LOC107918524
cit-r.1	102626601	uncharacterized LOC102626601
cit-r.1	102627321	uncharacterized LOC102627321
gma-u.5	100527260	uncharacterized LOC100527260
gma-u.5	100527051	uncharacterized LOC100527051
gma-u.5	100527040	uncharacterized LOC100527040
vvi-u.5	100853783	uncharacterized LOC100853783
ppo-u.5	7468723	uncharacterized LOC7468723
ppo-u.5	7469993	uncharacterized LOC7469993
mtr-u.5	11417851	uncharacterized LOC11417851
sly-u.5	101267126	uncharacterized LOC101267126
sot-r.1	107061696	uncharacterized LOC107061696
sot-r.1	102588007	uncharacterized LOC102588007
nta-r.1	107829750	uncharacterized LOC107829750
nta-r.1	107815879	uncharacterized LOC107815879
osa-u.5	4333956	uncharacterized LOC4333956
osa-u.5	9267329	uncharacterized LOC9267329
zma-u.5	100274732	uncharacterized LOC100274732
zma-u.5	100275193	uncharacterized LOC100275193
tae-r.2	123087039	uncharacterized LOC123087039
tae-r.2	123090925	uncharacterized LOC123090925
tae-r.2	123157469	uncharacterized LOC123157469
hvu-r.1	123447621	uncharacterized LOC123447621
hvu-r.1	123408171	uncharacterized LOC123408171
sbi-r.1	8059977	uncharacterized LOC8059977
bdi-r.1	100841996	uncharacterized LOC100841996

Top 50 coexpressed genes to 103842507 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103842507 (bra-r.6 coexpression data)

CoexMap"103842507"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_009117380.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, mito 1

(predict for XP_009117380.1)

Subcellular
localization
TargetP

other 7

(predict for XP_009117380.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103842507	bra-r.6 for 103870811	bna-r.1 for BNAC07G47310D	bna-r.1 for 106360176	bna-r.1 for BNAA06G40720D	ath-u.5 for AT2G21640	ath-u.5 for AT3G05570	ath-u.5 for AT4G39235	ghi-r.1 for 107919934	ghi-r.1 for 107918524	cit-r.1 for 102626601	cit-r.1 for 102627321	gma-u.5 for 100527260	gma-u.5 for 100527051	gma-u.5 for 100527040	vvi-u.5 for 100853783	ppo-u.5 for 7468723	ppo-u.5 for 7469993	mtr-u.5 for 11417851	sly-u.5 for 101267126	sot-r.1 for 107061696	sot-r.1 for 102588007	nta-r.1 for 107829750	nta-r.1 for 107815879	osa-u.5 for 4333956	osa-u.5 for 9267329	zma-u.5 for 100274732	zma-u.5 for 100275193	tae-r.2 for 123087039	tae-r.2 for 123090925	tae-r.2 for 123157469	hvu-r.1 for 123447621	hvu-r.1 for 123408171	sbi-r.1 for 8059977	bdi-r.1 for 100841996

Ortholog

Ortholog ID: 4867

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC103842507

uncharacterized LOC103870811

uncharacterized BNAC07G47310D

uncharacterized LOC106360176

uncharacterized LOC125609131

marker for oxidative stress response protein

dipeptide transport ATP-binding protein

uncharacterized protein

uncharacterized LOC107919934

uncharacterized LOC107918524

uncharacterized LOC102626601

uncharacterized LOC102627321

uncharacterized LOC100527260

uncharacterized LOC100527051

uncharacterized LOC100527040

uncharacterized LOC100853783

uncharacterized LOC7468723

uncharacterized LOC7469993

uncharacterized LOC11417851

uncharacterized LOC101267126

uncharacterized LOC107061696

uncharacterized LOC102588007

uncharacterized LOC107829750

uncharacterized LOC107815879

uncharacterized LOC4333956

uncharacterized LOC9267329

uncharacterized LOC100274732

uncharacterized LOC100275193

uncharacterized LOC123087039

uncharacterized LOC123157469

uncharacterized LOC123095959

uncharacterized LOC123447621

uncharacterized LOC123408171

uncharacterized LOC8059977

uncharacterized LOC100841996

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	5
bna03018	RNA degradation	3
bna04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	10
bna00230	Purine metabolism	3
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2
ghi03040	Spliceosome	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	9
ghi00010	Glycolysis / Gluconeogenesis	7
ghi01230	Biosynthesis of amino acids	7
ghi00710	Carbon fixation by Calvin cycle	5
ghi00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00480	Glutathione metabolism	2
cit02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2
gma03082	ATP-dependent chromatin remodeling	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03022	Basal transcription factors	2
vvi03018	RNA degradation	2
vvi03040	Spliceosome	2
vvi00190	Oxidative phosphorylation	2
vvi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	5
ppo03040	Spliceosome	2
ppo03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	5
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4
sot03040	Spliceosome	3
sot03020	RNA polymerase	2
sot03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot00190	Oxidative phosphorylation	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	2
nta03420	Nucleotide excision repair	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	6
nta03250	Viral life cycle - HIV-1	4
nta03420	Nucleotide excision repair	3
nta04141	Protein processing in endoplasmic reticulum	3
nta03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00010	Glycolysis / Gluconeogenesis	4
osa01200	Carbon metabolism	4
osa01230	Biosynthesis of amino acids	4
osa03050	Proteasome	3
osa00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	4
osa03010	Ribosome	4
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	4
zma03008	Ribosome biogenesis in eukaryotes	4
zma03013	Nucleocytoplasmic transport	4
zma03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	9
tae01200	Carbon metabolism	8
tae04148	Efferocytosis	4
tae00020	Citrate cycle (TCA cycle)	4
tae00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	14
tae00010	Glycolysis / Gluconeogenesis	11
tae01230	Biosynthesis of amino acids	11
tae00620	Pyruvate metabolism	9
tae00020	Citrate cycle (TCA cycle)	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	9
sbi00010	Glycolysis / Gluconeogenesis	8
sbi00710	Carbon fixation by Calvin cycle	7
sbi01230	Biosynthesis of amino acids	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	3
bdi00190	Oxidative phosphorylation	2
bdi04145	Phagosome	2

Expression

Expression pattern

Entrez Gene ID^*

103842507

103870811

106409071

106360176

125609131

816702

819723

830079

107919934

107918524

102626601

102627321

100527260

100527051

100527040

100853783

7468723

7469993

11417851

101267126

107061696

102588007

107829750

107815879

4333956

9267329

100274732

100275193

123087039

123157469

123095959

123447621

123408171

8059977

100841996

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Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	3	3	2	2	3	1	2	1	1	2	2	2	2	3	2	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103842507 (bra-r.6 coexpression data)

Top 50 enrichment test to 103842507 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**