ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103848684	protein EMSY-LIKE 4
bra-r.6	103858133	protein EMSY-LIKE 4
bra-r.6	103855992	protein EMSY-LIKE 3
bra-r.6	103850839	protein EMSY-LIKE 3
bna-r.1	111198009	protein EMSY-LIKE 1-like
bna-r.1	106351754	protein EMSY-LIKE 1-like
bna-r.1	106454725	protein EMSY-LIKE 3
ath-u.5	EML4	Emsy N Terminus (ENT) domain-containing protein
ath-u.5	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-u.5	EML2	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ghi-r.1	121220158	protein EMSY-LIKE 3
ghi-r.1	107899744	protein EMSY-LIKE 1
ghi-r.1	107906749	protein EMSY-LIKE 3
cit-r.1	102616204	protein EMSY-LIKE 3-like
cit-r.1	102631217	protein EMSY-LIKE 1
cit-r.1	102607702	hypothetical protein
gma-u.5	100781999	protein EMSY-LIKE 1
gma-u.5	100807441	protein EMSY-LIKE 3
vvi-u.5	100253804	protein EMSY-LIKE 3
vvi-u.5	100257061	protein EMSY-LIKE 3
vvi-u.5	100263217	protein EMSY-LIKE 3
ppo-u.5	7483280	protein EMSY-LIKE 3
ppo-u.5	7489297	protein EMSY-LIKE 3
mtr-u.5	25483510	protein EMSY-LIKE 1
mtr-u.5	11446706	protein EMSY-LIKE 3
sly-u.5	101267780	protein EMSY-LIKE 3
sly-u.5	101055531	Hop-interacting protein THI115
sly-u.5	101251479	protein EMSY-LIKE 3-like
sot-r.1	102600733	protein EMSY-LIKE 3-like
sot-r.1	102591642	protein EMSY-LIKE 3-like
nta-r.1	107767252	protein EMSY-LIKE 3
nta-r.1	107819066	protein EMSY-LIKE 3
nta-r.1	107814920	protein EMSY-LIKE 3
osa-u.5	4346001	protein EMSY-LIKE 3
osa-u.5	4346600	protein EMSY-LIKE 3
osa-u.5	4345288	protein EMSY-LIKE 3
zma-u.5	100274024	ENT domain containing protein
zma-u.5	100125653	r-interacting factor 1
zma-u.5	100276211	uncharacterized LOC100276211
tae-r.2	123112417	protein EMSY-LIKE 3
tae-r.2	123121934	protein EMSY-LIKE 3
tae-r.2	123104175	protein EMSY-LIKE 3
hvu-r.1	123399416	protein EMSY-LIKE 3-like
hvu-r.1	123451761	protein EMSY-LIKE 3-like
sbi-r.1	8064855	protein EMSY-LIKE 3
sbi-r.1	8069905	protein EMSY-LIKE 3
sbi-r.1	8063462	protein EMSY-LIKE 3
bdi-r.1	100837286	protein EMSY-LIKE 3
bdi-r.1	100836980	protein EMSY-LIKE 3
bdi-r.1	100824948	protein EMSY-LIKE 3
cre-r.1	CHLRE_05g237350v5	uncharacterized protein

Top 50 coexpressed genes to 103848684 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103848684 (bra-r.6 coexpression data)

CoexMap"103848684"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0050832 [list] [network] defense response to fungus

(57 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(4801 genes)

IEA

GO MF

Protein

XP_033145653.1 [sequence] [blastp]
XP_033145654.1 [sequence] [blastp]
XP_033145655.1 [sequence] [blastp]
XP_033145656.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 1, cyto 1, plas 1, extr 1, golg 1, chlo_mito 1, golg_plas 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_033145653.1)
nucl 5, chlo 1, cyto 1, plas 1, extr 1, golg 1, chlo_mito 1, golg_plas 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_033145654.1)
nucl 5, chlo 1, cyto 1, plas 1, extr 1, golg 1, chlo_mito 1, golg_plas 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_033145655.1)
nucl 5, chlo 1, cyto 1, plas 1, extr 1, golg 1, chlo_mito 1, golg_plas 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_033145656.1)

Subcellular
localization
TargetP

other 8	(predict for XP_033145653.1)
other 8	(predict for XP_033145654.1)
other 8	(predict for XP_033145655.1)
other 8	(predict for XP_033145656.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103848684	bra-r.6 for 103858133	bra-r.6 for 103855992	bra-r.6 for 103850839	bna-r.1 for 111198009	bna-r.1 for 106351754	bna-r.1 for 106454725	ath-u.5 for EML4	ath-u.5 for EML1	ath-u.5 for EML2	ghi-r.1 for 121220158	ghi-r.1 for 107899744	ghi-r.1 for 107906749	cit-r.1 for 102616204	cit-r.1 for 102631217	cit-r.1 for 102607702	gma-u.5 for 100781999	gma-u.5 for 100807441	vvi-u.5 for 100253804	vvi-u.5 for 100257061	vvi-u.5 for 100263217	ppo-u.5 for 7483280	ppo-u.5 for 7489297	mtr-u.5 for 25483510	mtr-u.5 for 11446706	sly-u.5 for 101267780	sly-u.5 for 101055531	sly-u.5 for 101251479	sot-r.1 for 102600733	sot-r.1 for 102591642	nta-r.1 for 107767252	nta-r.1 for 107819066	nta-r.1 for 107814920	osa-u.5 for 4346001	osa-u.5 for 4346600	osa-u.5 for 4345288	zma-u.5 for 100274024	zma-u.5 for 100125653	zma-u.5 for 100276211	tae-r.2 for 123112417	tae-r.2 for 123121934	tae-r.2 for 123104175	hvu-r.1 for 123399416	hvu-r.1 for 123451761	sbi-r.1 for 8064855	sbi-r.1 for 8069905	sbi-r.1 for 8063462	bdi-r.1 for 100837286	bdi-r.1 for 100836980	bdi-r.1 for 100824948	cre-r.1 for CHLRE_05g237350v5

Ortholog

Ortholog ID: 724

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

EML4

EML1

EML2

Function^*

protein EMSY-LIKE 3

protein EMSY-LIKE 2

protein EMSY-LIKE 1-like

protein EMSY-LIKE 3-like

Emsy N Terminus (ENT) domain-containing protein

Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein

protein EMSY-LIKE 3

protein EMSY-LIKE 1

protein EMSY-LIKE 3

protein EMSY-LIKE 3-like

protein EMSY-LIKE 1

hypothetical protein

protein EMSY-LIKE 3

protein EMSY-LIKE 1

protein EMSY-LIKE 4

protein EMSY-LIKE 3

protein EMSY-LIKE 2

protein EMSY-LIKE 3

Hop-interacting protein THI115

protein EMSY-LIKE 3

protein EMSY-LIKE 3-like

protein EMSY-LIKE 3

protein EMSY-LIKE 3-like

protein EMSY-LIKE 3

ENT domain containing protein

uncharacterized LOC100193058

ENT domain containing protein

protein EMSY-LIKE 3

protein EMSY-LIKE 3-like

protein EMSY-LIKE 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00670	One carbon pool by folate	3
bna04981	Folate transport and metabolism	3
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	9
ghi03015	mRNA surveillance pathway	7
ghi03040	Spliceosome	7
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	6
cit00944	Flavone and flavonol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03460	Fanconi anemia pathway	2
gma03022	Basal transcription factors	2
gma03420	Nucleotide excision repair	2
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03018	RNA degradation	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	5
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2
zma04144	Endocytosis	2
zma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	4
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

103855992

103850839

103847017

111198009

125593356

106372384

819051

820389

830567

121220158

107899744

107959329

102616204

102631217

102607702

100807441

100789282

100785958

100253804

100257061

100263217

7489297

7461395

18106147

11446706

11414313

101267780

101055531

101252218

102600733

102591642

107814920

107813144

107771941

4346001

4345288

4337275

100274024

100193058

100284576

123121934

123103404

123120969

123399416

123451761

8069905

8064023

8062031

100837286

100836980

100824948

5723353

The preparation time of this page was 0.2 [sec].


Species	bra	bna	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	2	3	2	2	3	2	3	3	3	3	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103848684 (bra-r.6 coexpression data)

Top 50 enrichment test to 103848684 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**