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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103854483   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 bna-r.1   106401001   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 bna-r.1   125609112   pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like 
 ath-u.5   PPR2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107942339   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 ghi-r.1   107916249   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 cit-r.1   102618086   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 gma-u.5   100813729   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 gma-u.5   100786610   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 gma-u.5   100776657   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 vvi-u.5   100257907   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 ppo-u.5   7471076   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 ppo-u.5   7468136   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 mtr-u.5   120577889   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 mtr-u.5   11419567   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 sly-u.5   101254329   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 sly-u.5   101247998   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 sot-r.1   102599390   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 sot-r.1   102581788   pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like 
 nta-r.1   107770930   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 nta-r.1   107763533   pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like 
 osa-u.5   4332626   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 zma-u.5   100281431   uncharacterized LOC100281431 
 tae-r.2   123091725   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 tae-r.2   123096707   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 tae-r.2   123086293   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 hvu-r.1   123448123   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 sbi-r.1   8084261   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 
 bdi-r.1   100823312   pentatricopeptide repeat-containing protein At3g06430, chloroplastic 

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Top 50 coexpressed genes to 103854483 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103854483 (bra-r.6 coexpression data)

CoexMap"103854483"


braLOC103854483 | Entrez gene ID : 103854483    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 1 2 1 2 1 3 1 2 2 2 2 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (432 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009129670.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  chlo_mito 4,  cyto 1,  mito 1,  cyto_nucl 1,  cyto_plas 1  (predict for XP_009129670.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_009129670.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103854483
bna-r.1
for
106401001
bna-r.1
for
125609112
ath-u.5
for
PPR2
ghi-r.1
for
107942339
ghi-r.1
for
107916249
cit-r.1
for
102618086
gma-u.5
for
100813729
gma-u.5
for
100786610
gma-u.5
for
100776657
vvi-u.5
for
100257907
ppo-u.5
for
7471076
ppo-u.5
for
7468136
mtr-u.5
for
120577889
mtr-u.5
for
11419567
sly-u.5
for
101254329
sly-u.5
for
101247998
sot-r.1
for
102599390
sot-r.1
for
102581788
nta-r.1
for
107770930
nta-r.1
for
107763533
osa-u.5
for
4332626
zma-u.5
for
100281431
tae-r.2
for
123091725
tae-r.2
for
123096707
tae-r.2
for
123086293
hvu-r.1
for
123448123
sbi-r.1
for
8084261
bdi-r.1
for
100823312


Ortholog ID: 7979
Species bra bna bna ath ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC103854483 LOC106401001 LOC125609112 PPR2 LOC107942339 LOC107916249 LOC102618086 LOC100813729 LOC100786610 LOC100776657 LOC100257907 LOC7471076 LOC7468136 LOC120577889 LOC11419567 LOC101254329 LOC101247998 LOC102599390 LOC102581788 LOC107770930 LOC107763533 LOC4332626 LOC100281431 LOC123091725 LOC123096707 LOC123086293 LOC123448123 LOC8084261 LOC100823312
Function* pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic-like pentatricopeptide repeat-containing protein At3g06430, chloroplastic uncharacterized LOC100281431 pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic pentatricopeptide repeat-containing protein At3g06430, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
bna03060 Protein export 2
bna04145 Phagosome 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 2
bna04141 Protein processing in endoplasmic reticulum 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 6
mtr03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly00860 Porphyrin metabolism 4
sly01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 7
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103854483 106401001 125609112 819817 107942339 107916249 102618086 100813729 100786610 100776657 100257907 7471076 7468136 120577889 11419567 101254329 101247998 102599390 102581788 107770930 107763533 4332626 100281431 123091725 123096707 123086293 123448123 8084261 100823312
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