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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103860428   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 bra-r.6   103844471   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 bna-r.1   106439863   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 bna-r.1   111204608   pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like 
 ath-u.5   AT2G15690   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ghi-r.1   107893325   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 ghi-r.1   121212204   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 ghi-r.1   107894258   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 cit-r.1   102614374   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 cit-r.1   102621863   pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like 
 gma-u.5   100818823   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 gma-u.5   100802330   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 gma-u.5   100795965   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 vvi-u.5   100260539   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 vvi-u.5   100259416   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 ppo-u.5   112326961   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 mtr-u.5   11438441   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 mtr-u.5   11445976   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 sly-u.5   101266169   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 sly-u.5   101254312   pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like 
 sot-r.1   102591432   pentatricopeptide repeat-containing protein At2g15690-like 
 sot-r.1   102595751   pentatricopeptide repeat-containing protein At2g15690 
 nta-r.1   107790989   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 nta-r.1   107782664   pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like 
 nta-r.1   107768621   pentatricopeptide repeat-containing protein At2g15690, mitochondrial 
 osa-u.5   4335071   pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like 
 zma-u.5   100304360   pentatricopeptide repeat (PPR) superfamily protein 
 zma-u.5   100381568   pentatricopeptide repeat (PPR) superfamily protein 
 tae-r.2   123149364   probable receptor-like protein kinase At2g42960 
 sbi-r.1   8065315   pentatricopeptide repeat-containing protein At2g15690 
 sbi-r.1   8074522   pentatricopeptide repeat-containing protein At2g15690 

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Top 50 coexpressed genes to 103860428 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103860428 (bra-r.6 coexpression data)

CoexMap"103860428"


braLOC103860428 | Entrez gene ID : 103860428    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae sbi bdi cre hvu
Paralog 2 2 1 3 2 3 2 1 2 2 2 3 1 2 1 2 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (422 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (1500 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1857 genes)  IEA  
GO:0005515 [list] [network] protein binding  (6277 genes)  IEA  
Protein XP_009136277.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 1,  nucl 1,  pero 1,  cyto_mito 1,  mito_plas 1  (predict for XP_009136277.1)
Subcellular
localization
TargetP
chlo 6,  mito 5  (predict for XP_009136277.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103860428
bra-r.6
for
103844471
bna-r.1
for
106439863
bna-r.1
for
111204608
ath-u.5
for
AT2G15690
ghi-r.1
for
107893325
ghi-r.1
for
121212204
ghi-r.1
for
107894258
cit-r.1
for
102614374
cit-r.1
for
102621863
gma-u.5
for
100818823
gma-u.5
for
100802330
gma-u.5
for
100795965
vvi-u.5
for
100260539
vvi-u.5
for
100259416
ppo-u.5
for
112326961
mtr-u.5
for
11438441
mtr-u.5
for
11445976
sly-u.5
for
101266169
sly-u.5
for
101254312
sot-r.1
for
102591432
sot-r.1
for
102595751
nta-r.1
for
107790989
nta-r.1
for
107782664
nta-r.1
for
107768621
osa-u.5
for
4335071
zma-u.5
for
100304360
zma-u.5
for
100381568
tae-r.2
for
123149364
sbi-r.1
for
8065315
sbi-r.1
for
8074522


Ortholog ID: 5944
Species bra bra bna bna ath ghi ghi ghi cit cit gma gma vvi vvi ppo mtr mtr sly sly sot sot nta nta nta osa zma zma tae sbi sbi
Symbol LOC103860428 LOC103844471 LOC106439863 LOC111204608 AT2G15690 LOC107893325 LOC121212204 LOC107932078 LOC102614374 LOC102621863 LOC100802330 LOC100783921 LOC100260539 LOC100259416 LOC112326961 LOC11438441 LOC11445976 LOC101266169 LOC101254312 LOC102591432 LOC102595751 LOC107782664 LOC107768621 LOC107792967 LOC4335071 LOC100304360 LOC100381568 LOC123149364 LOC8065315 LOC8074522
Function* pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like pentatricopeptide repeat-containing protein At2g15690-like pentatricopeptide repeat-containing protein At2g15690 pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat (PPR) superfamily protein probable receptor-like protein kinase At2g42960 pentatricopeptide repeat-containing protein At2g15690 pentatricopeptide repeat-containing protein At2g15690
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma00561 Glycerolipid metabolism 2
gma00566 Sulfoquinovose metabolism 2
gma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo00230 Purine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103860428 103844471 106439863 111204608 816062 107893325 121212204 107932078 102614374 102621863 100802330 100783921 100260539 100259416 112326961 11438441 11445976 101266169 101254312 102591432 102595751 107782664 107768621 107792967 4335071 100304360 100381568 123149364 8065315 8074522
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