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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103862329   agamous-like MADS-box protein AGL16 
 bra-r.6   103840485   agamous-like MADS-box protein AGL16 
 bra-r.6   103856547   agamous-like MADS-box protein AGL21 
 bna-r.1   106393975   agamous-like MADS-box protein AGL16 
 bna-r.1   106359933   agamous-like MADS-box protein AGL21 
 ath-u.5   AGL16   AGAMOUS-like 16 
 ghi-r.1   107908410   MADS-box transcription factor 23-like 
 cit-r.1   102613302   MADS-box transcription factor 23-like 
 cit-r.1   102630220   MADS-box transcription factor 23-like 
 gma-u.5   100812413   MADS-box transcription factor 23 
 gma-u.5   100778970   MADS-box transcription factor 23 
 mtr-u.5   11407839   agamous-like MADS-box protein AGL21 
 mtr-u.5   11423803   MADS-box transcription factor 23 
 mtr-u.5   11418839   MADS-box transcription factor 23 
 sot-r.1   102593715   MADS-box transcription factor 23-like 
 sot-r.1   102591829   MADS-box transcription factor 23 
 sot-r.1   102582884   MADS-box transcription factor 23-like 
 nta-r.1   107825287   MADS-box transcription factor 23-like 
 nta-r.1   107825118   MADS-box transcription factor 23-like 
 nta-r.1   107811079   MADS-box transcription factor 23-like 
 osa-u.5   4329771   MADS-box transcription factor 27-like 
 osa-u.5   4330621   MADS-box transcription factor 57-like 
 osa-u.5   4335427   MADS-box transcription factor 25-like 
 zma-u.5   541764   MADS2 
 zma-u.5   103655506   MADS-box transcription factor 27 
 sbi-r.1   110434910   MADS-box transcription factor 57-like 
 sbi-r.1   8057478   MADS-box transcription factor 27 
 bdi-r.1   100823221   MADS-box transcription factor 27 
 bdi-r.1   100840222   MADS-box transcription factor 57-like 

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Top 50 coexpressed genes to 103862329 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103862329 (bra-r.6 coexpression data)

CoexMap"103862329"


braLOC103862329 | Entrez gene ID : 103862329    
Species bra bna ath ghi cit gma mtr sot nta osa zma sbi bdi vvi sly tae ppo cre hvu
Paralog 3 2 1 1 2 2 3 3 3 3 2 2 2 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (248 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (4801 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (391 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (478 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (727 genes)  IEA  
Protein XP_009138271.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for XP_009138271.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for XP_009138271.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103862329
bra-r.6
for
103840485
bra-r.6
for
103856547
bna-r.1
for
106393975
bna-r.1
for
106359933
ath-u.5
for
AGL16
ghi-r.1
for
107908410
cit-r.1
for
102613302
cit-r.1
for
102630220
gma-u.5
for
100812413
gma-u.5
for
100778970
mtr-u.5
for
11407839
mtr-u.5
for
11423803
mtr-u.5
for
11418839
sot-r.1
for
102593715
sot-r.1
for
102591829
sot-r.1
for
102582884
nta-r.1
for
107825287
nta-r.1
for
107825118
nta-r.1
for
107811079
osa-u.5
for
4329771
osa-u.5
for
4330621
osa-u.5
for
4335427
zma-u.5
for
541764
zma-u.5
for
103655506
sbi-r.1
for
110434910
sbi-r.1
for
8057478
bdi-r.1
for
100823221
bdi-r.1
for
100840222


Ortholog ID: 554
Species bra bra bna bna ath ghi cit cit gma ppo mtr mtr mtr sot sot sot nta nta nta osa osa zma zma tae hvu sbi sbi bdi bdi
Symbol LOC103862329 LOC103856547 LOC106390859 LOC106436609 AGL16 LOC121202993 LOC102613302 LOC102630220 LOC100812413 LOC7461842 LOC11407839 LOC11423803 LOC11418839 LOC102593715 LOC102591829 LOC102582884 LOC107811079 LOC107798569 LOC107770946 LOC4329771 LOC4335427 LOC541764 LOC103655506 LOC100136966 LOC123426922 LOC110434910 LOC8057478 LOC100823221 LOC100840222
Function* agamous-like MADS-box protein AGL16 agamous-like MADS-box protein AGL21 agamous-like MADS-box protein AGL16 agamous-like MADS-box protein AGL21 AGAMOUS-like 16 MADS-box transcription factor 23 MADS-box transcription factor 23-like MADS-box transcription factor 23-like MADS-box transcription factor 23 MADS-box transcription factor 23 agamous-like MADS-box protein AGL21 MADS-box transcription factor 23 MADS-box transcription factor 23 MADS-box transcription factor 23-like MADS-box transcription factor 23 MADS-box transcription factor 23-like MADS-box transcription factor 23-like MADS-box transcription factor 23 MADS-box transcription factor 23-like MADS-box transcription factor 27-like MADS-box transcription factor 25-like MADS2 MADS-box transcription factor 27 MADS-box transcription factor 27 MADS-box transcription factor 27-like MADS-box transcription factor 57-like MADS-box transcription factor 27 MADS-box transcription factor 27 MADS-box transcription factor 57-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 8
bna00920 Sulfur metabolism 8
bna01200 Carbon metabolism 8
bna01230 Biosynthesis of amino acids 8
bna01320 Sulfur cycle 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 4
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 4
mtr04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 8
bdi03040 Spliceosome 3
bdi04144 Endocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103862329 103856547 106390859 106436609 824890 121202993 102613302 102630220 100812413 7461842 11407839 11423803 11418839 102593715 102591829 102582884 107811079 107798569 107770946 4329771 4335427 541764 103655506 100136966 123426922 110434910 8057478 100823221 100840222
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