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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103866749   polyadenylate-binding protein RBP45C 
 bra-r.6   103868789   polyadenylate-binding protein RBP47A 
 bra-r.6   103844941   polyadenylate-binding protein RBP45A 
 bra-r.6   103843233   polyadenylate-binding protein RBP45B 
 bna-r.1   106414484   polyadenylate-binding protein RBP45C-like 
 bna-r.1   125608524   polyadenylate-binding protein RBP47B-like 
 bna-r.1   125584144   polyadenylate-binding protein RBP47B'-like 
 ath-u.5   RBP45B   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   RBP47A   RNA-binding protein 47A 
 ath-u.5   RBP47C'   RNA-binding protein 47C' 
 ghi-r.1   107933435   polyadenylate-binding protein RBP45C 
 ghi-r.1   107935615   polyadenylate-binding protein RBP47B 
 ghi-r.1   107958098   polyadenylate-binding protein RBP47 
 cit-r.1   102622145   polyadenylate-binding protein RBP47-like 
 cit-r.1   102613416   polyadenylate-binding protein RBP45 
 cit-r.1   102613263   polyadenylate-binding protein RBP45C 
 gma-u.5   100819523   polyadenylate-binding protein RBP47C 
 gma-u.5   100801446   polyadenylate-binding protein RBP47C 
 gma-u.5   100801562   polyadenylate-binding protein RBP45 
 vvi-u.5   100243203   polyadenylate-binding protein RBP47B' 
 vvi-u.5   100258930   polyadenylate-binding protein RBP47 
 ppo-u.5   7462894   polyadenylate-binding protein RBP47 
 ppo-u.5   7458536   polyadenylate-binding protein RBP45B 
 ppo-u.5   7454435   polyadenylate-binding protein RBP45C 
 mtr-u.5   11429879   polyadenylate-binding protein RBP47B' 
 mtr-u.5   11439565   polyadenylate-binding protein RBP45 
 mtr-u.5   25486138   polyadenylate-binding protein RBP45 
 sly-u.5   101261707   polyadenylate-binding protein RBP47 
 sly-u.5   101247965   polyadenylate-binding protein RBP47 
 sly-u.5   101250426   polyadenylate-binding protein RBP45 
 sot-r.1   102577916   DNA binding protein ACBF-like 
 sot-r.1   102583610   polyadenylate-binding protein RBP45 
 sot-r.1   102590727   polyadenylate-binding protein RBP45-like 
 nta-r.1   107826742   polyadenylate-binding protein RBP45-like 
 nta-r.1   107789104   polyadenylate-binding protein RBP45 
 nta-r.1   107798870   polyadenylate-binding protein RBP47C'-like 
 osa-u.5   4329718   polyadenylate-binding protein RBP47 
 osa-u.5   4331788   polyadenylate-binding protein RBP47B' 
 osa-u.5   4333283   RNA-binding protein L-like 
 zma-u.5   100278143   uncharacterized LOC100278143 
 zma-u.5   100284282   nucleic acid binding protein 
 zma-u.5   100285821   uncharacterized LOC100285821 
 tae-r.2   123127542   polyadenylate-binding protein RBP47 
 tae-r.2   123132110   RNA-binding protein L 
 tae-r.2   123143649   RNA-binding protein L 
 hvu-r.1   123425891   RNA-binding protein L-like 
 hvu-r.1   123398803   polyadenylate-binding protein RBP47-like 
 hvu-r.1   123449576   polyadenylate-binding protein RBP47B' 
 sbi-r.1   8057438   polyadenylate-binding protein RBP47 
 sbi-r.1   8066818   polyadenylate-binding protein RBP45 
 sbi-r.1   8080123   polyadenylate-binding protein RBP45 
 bdi-r.1   100825555   polyadenylate-binding protein RBP47 
 bdi-r.1   100827124   polyadenylate-binding protein RBP45 
 bdi-r.1   100831361   polyadenylate-binding protein RBP47C' 
 cre-r.1   CHLRE_16g652900v5   uncharacterized protein 

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Top 50 coexpressed genes to 103866749 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103866749 (bra-r.6 coexpression data)

CoexMap"103866749"


braLOC103866749 | Entrez gene ID : 103866749    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 3 3 2 3 3 3 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (1543 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (432 genes)  IEA  
Protein XP_009142977.2 [sequence] [blastp]
XP_033128009.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto_nucl 4,  cyto 1,  extr 1,  E.R. 1,  pero 1  (predict for XP_009142977.2)
nucl 6,  cyto_nucl 4,  pero 1,  cyto 1,  extr 1,  E.R. 1  (predict for XP_033128009.1)
Subcellular
localization
TargetP
other 4,  mito 4  (predict for XP_009142977.2)
other 4,  mito 4  (predict for XP_033128009.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103866749
bra-r.6
for
103868789
bra-r.6
for
103844941
bra-r.6
for
103843233
bna-r.1
for
106414484
bna-r.1
for
125608524
bna-r.1
for
125584144
ath-u.5
for
RBP45B
ath-u.5
for
RBP47A
ath-u.5
for
RBP47C'
ghi-r.1
for
107933435
ghi-r.1
for
107935615
ghi-r.1
for
107958098
cit-r.1
for
102622145
cit-r.1
for
102613416
cit-r.1
for
102613263
gma-u.5
for
100819523
gma-u.5
for
100801446
gma-u.5
for
100801562
vvi-u.5
for
100243203
vvi-u.5
for
100258930
ppo-u.5
for
7462894
ppo-u.5
for
7458536
ppo-u.5
for
7454435
mtr-u.5
for
11429879
mtr-u.5
for
11439565
mtr-u.5
for
25486138
sly-u.5
for
101261707
sly-u.5
for
101247965
sly-u.5
for
101250426
sot-r.1
for
102577916
sot-r.1
for
102583610
sot-r.1
for
102590727
nta-r.1
for
107826742
nta-r.1
for
107789104
nta-r.1
for
107798870
osa-u.5
for
4329718
osa-u.5
for
4331788
osa-u.5
for
4333283
zma-u.5
for
100278143
zma-u.5
for
100284282
zma-u.5
for
100285821
tae-r.2
for
123127542
tae-r.2
for
123132110
tae-r.2
for
123143649
hvu-r.1
for
123425891
hvu-r.1
for
123398803
hvu-r.1
for
123449576
sbi-r.1
for
8057438
sbi-r.1
for
8066818
sbi-r.1
for
8080123
bdi-r.1
for
100825555
bdi-r.1
for
100827124
bdi-r.1
for
100831361
cre-r.1
for
CHLRE_16g652900v5


Ortholog ID: 192
Species bra bra bra bna bna bna ath ath ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC103839291 LOC103837516 LOC103869491 LOC125584144 LOC125609228 LOC106410514 RBP45B AT5G19350 ATRBP45C LOC107926276 LOC107920130 LOC107942660 LOC102613263 LOC102608432 LOC100801562 LOC100813616 LOC100785454 LOC100243203 LOC100257353 LOC18104937 LOC18097813 LOC18095820 LOC25486138 LOC25482078 LOC11446957 LOC101250426 LOC101255948 LOC101254975 LOC102583610 LOC102590727 LOC102595348 LOC107827228 LOC107831077 LOC107774489 LOC4331788 LOC4344847 LOC9270800 LOC103628560 LOC103653663 LOC100273450 LOC123112245 LOC123052545 LOC123104011 LOC123425891 LOC123427909 LOC123426861 LOC8057438 LOC8066818 LOC8063033 LOC100831361 LOC100840332 LOC100845432 CHLRE_16g652900v5
Function* polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47B'-like polyadenylate-binding protein RBP47A-like polyadenylate-binding protein RBP45C-like RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45-like polyadenylate-binding protein RBP47-like polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' RNA-binding protein L-like RNA-binding protein L-like polyadenylate-binding protein RBP47A polyadenylate-binding protein RBP47 uncharacterized LOC100273450 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47 RNA-binding protein L-like RNA-binding protein L-like polyadenylate-binding protein RBP47-like polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C' polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00240 Pyrimidine metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03040 Spliceosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03015 mRNA surveillance pathway 2
mtr03040 Spliceosome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 4
sly03040 Spliceosome 3
sly04141 Protein processing in endoplasmic reticulum 3
sly00290 Valine, leucine and isoleucine biosynthesis 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly04141 Protein processing in endoplasmic reticulum 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
sot03040 Spliceosome 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot03013 Nucleocytoplasmic transport 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 3
osa03050 Proteasome 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04712 Circadian rhythm - plant 2
zma00730 Thiamine metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 3
bdi03040 Spliceosome 3
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
cre04120 Ubiquitin mediated proteolysis 2
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103839291 103837516 103869491 125584144 125609228 106410514 837708 832055 828808 107926276 107920130 107942660 102613263 102608432 100801562 100813616 100785454 100243203 100257353 18104937 18097813 18095820 25486138 25482078 11446957 101250426 101255948 101254975 102583610 102590727 102595348 107827228 107831077 107774489 4331788 4344847 9270800 103628560 103653663 100273450 123112245 123052545 123104011 123425891 123427909 123426861 8057438 8066818 8063033 100831361 100840332 100845432 66056515
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