ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bra-r.6	103867980	protein FLC EXPRESSOR
ath-u.5	AT2G30120	protein FLC EXPRESSOR
ath-u.5	AT3G14750	structural maintenance of chromosomes domain protein
gma-u.5	100814093	protein FLC EXPRESSOR
gma-u.5	100805851	protein FLX-like 1
gma-u.5	100791395	protein FLX-like 1
vvi-u.5	100262249	protein FLX-like 1
vvi-u.5	100258756	protein FLC EXPRESSOR
vvi-u.5	100267569	uncharacterized LOC100267569
ppo-u.5	7454837	protein FLX-like 1
ppo-u.5	7459142	protein FLX-like 1
ppo-u.5	7496800	protein FLC EXPRESSOR
mtr-u.5	11446710	protein FLX-like 1
mtr-u.5	11405959	protein FLC EXPRESSOR
sly-u.5	101253223	protein FLX-like 1
sly-u.5	101250713	protein FLX-like 1
osa-u.5	4343340	protein FLX-like 1
osa-u.5	4334576	protein FLX-like 1
zma-u.5	100284881	myosin-like protein
zma-u.5	100279414	Protein FLX-like 1
zma-u.5	100272540	Protein FLC EXPRESSOR

Top 50 coexpressed genes to 103867980 (bra-r.6 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103867980 (bra-r.6 coexpression data)

CoexMap"103867980"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_009144328.1 [sequence] [blastp]
XP_018514548.1 [sequence] [blastp]
XP_033146934.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, mito 4, nucl_plas 3, plas 1, chlo 1, cyto 1	(predict for XP_009144328.1)
mito 4, nucl 3, nucl_plas 3, plas 1, chlo 1, cyto 1	(predict for XP_018514548.1)
nucl 4, mito 4, nucl_plas 3, plas 1, chlo 1, cyto 1	(predict for XP_033146934.1)

Subcellular
localization
TargetP

mito 4, other 3	(predict for XP_009144328.1)
mito 4, other 3	(predict for XP_018514548.1)
mito 4, other 3	(predict for XP_033146934.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bra-r.6 for 103867980	ath-u.5 for AT2G30120	ath-u.5 for AT3G14750	gma-u.5 for 100814093	gma-u.5 for 100805851	gma-u.5 for 100791395	vvi-u.5 for 100262249	vvi-u.5 for 100258756	vvi-u.5 for 100267569	ppo-u.5 for 7454837	ppo-u.5 for 7459142	ppo-u.5 for 7496800	mtr-u.5 for 11446710	mtr-u.5 for 11405959	sly-u.5 for 101253223	sly-u.5 for 101250713	osa-u.5 for 4343340	osa-u.5 for 4334576	zma-u.5 for 100284881	zma-u.5 for 100279414	zma-u.5 for 100272540

Ortholog

Ortholog ID: 2621

Species

bra

bna

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SMC

Function^*

protein FLX-like 1

protein FLC EXPRESSOR

structural maintenance of chromosomes domain protein

protein FLX-like 1

structural maintenance of chromosomes domain-containing protein

protein FLC EXPRESSOR

protein FLX-like 1

uncharacterized LOC100267569

protein FLX-like 1

protein FLC EXPRESSOR

protein FLX-like 1

Protein FLX-like 1

Protein FLC EXPRESSOR

protein FLC EXPRESSOR

protein FLX-like 1

protein FLC EXPRESSOR-like

protein FLX-like 1

protein FLC EXPRESSOR

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	4
bra04120	Ubiquitin mediated proteolysis	3
bra03420	Nucleotide excision repair	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra03420	Nucleotide excision repair	2
bra04141	Protein processing in endoplasmic reticulum	2
bra04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	6
bna00561	Glycerolipid metabolism	2
bna00564	Glycerophospholipid metabolism	2
bna00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00330	Arginine and proline metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00330	Arginine and proline metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3
cit03015	mRNA surveillance pathway	2
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2
gma03420	Nucleotide excision repair	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	8
gma00020	Citrate cycle (TCA cycle)	2
gma01200	Carbon metabolism	2
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	2
vvi00061	Fatty acid biosynthesis	2
vvi00780	Biotin metabolism	2
vvi01212	Fatty acid metabolism	2
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4
sly03050	Proteasome	4
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03022	Basal transcription factors	2
sot03010	Ribosome	2
sot03040	Spliceosome	2
sot03082	ATP-dependent chromatin remodeling	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	3
nta03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	5
tae04141	Protein processing in endoplasmic reticulum	5
tae04145	Phagosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	3
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu04712	Circadian rhythm - plant	2
hvu03013	Nucleocytoplasmic transport	2
hvu03018	RNA degradation	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03420	Nucleotide excision repair	3
sbi04130	SNARE interactions in vesicular transport	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00240	Pyrimidine metabolism	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03022	Basal transcription factors	2

Expression

Expression pattern

Entrez Gene ID^*

103869995

103869998

106381852

106436414

817564

820703

107904020

121202980

102612605

102578054

100814093

100779805

100267569

100262249

7459142

7496800

11405959

11446710

101253223

101250713

102585093

102589885

107775813

107776968

4343340

4334576

100279414

100272540

123123456

123052576

123453003

123425942

8057381

8080731

100829776

100841204

The preparation time of this page was 0.1 [sec].


Species	bra	ath	gma	vvi	ppo	mtr	sly	osa	zma	hvu	bna	cit	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	1	2	3	3	3	2	2	2	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103867980 (bra-r.6 coexpression data)

Top 50 enrichment test to 103867980 (bra-r.6 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**