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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103872007   general transcription and DNA repair factor IIH subunit TFB5 
 bra-r.6   103837662   thiosulfate sulfurtransferase 16, chloroplastic 
 bra-r.6   103832953   ras-related protein RABG3e 
 bra-r.6   103832630   nuclear transcription factor Y subunit A-5 
 ath-u.5   CRK8   cysteine-rich RECEPTOR-like kinase 
 ghi-r.1   121203494   leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 
 ghi-r.1   121205006   uncharacterized LOC121205006 
 cit-r.1   102626317   cell division protein FtsZ homolog 2-1, chloroplastic 
 vvi-u.5   109122214   retrovirus-related Pol polyprotein from transposon RE2 
 zma-u.5   103635502   serine-rich adhesin for platelets 
 zma-u.5   103642667   retrovirus-related Pol polyprotein from transposon RE1 
 zma-u.5   103644180   bZIP transcription factor RISBZ2 
 tae-r.2   123113213   uncharacterized mitochondrial protein AtMg00810 
 bdi-r.1   106866887   uncharacterized mitochondrial protein AtMg00810-like 
 cre-r.1   CHLRE_16g660331v5   uncharacterized protein 
 cre-r.1   CHLRE_03g183950v5   uncharacterized protein 
 cre-r.1   CHLRE_03g186800v5   uncharacterized protein 

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Top 50 coexpressed genes to 103872007 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103872007 (bra-r.6 coexpression data)

CoexMap"103872007"


braLOC103872007 | Entrez gene ID : 103872007    
Species bra ath ghi cit vvi zma tae bdi cre hvu sbi sly ppo nta osa mtr bna sot gma
Paralog 4 1 2 1 1 3 1 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG brp03022 [list] [network] Basal transcription factors (77 genes)
brp03420 [list] [network] Nucleotide excision repair (117 genes)
GO BP
GO:0006294 [list] [network] nucleotide-excision repair, preincision complex assembly  (2 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (52 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (92 genes)  IEA  
GO:0015074 [list] [network] DNA integration  (95 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (104 genes)  IEA  
GO CC
GO:0000439 [list] [network] transcription factor TFIIH core complex  (7 genes)  IEA  
GO:0005675 [list] [network] transcription factor TFIIH holo complex  (17 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (1500 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (5846 genes)  IEA  
Protein XP_009148595.1 [sequence] [blastp]
XP_009148597.1 [sequence] [blastp]
XP_018515268.1 [sequence] [blastp]
XP_033129771.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 2  (predict for XP_009148595.1)
cyto 7,  nucl 2  (predict for XP_009148597.1)
cyto 7,  nucl 2  (predict for XP_018515268.1)
nucl 4,  cyto 2,  cysk_nucl 2,  E.R. 1,  E.R._plas 1  (predict for XP_033129771.1)
Subcellular
localization
TargetP
scret 5,  other 3  (predict for XP_009148595.1)
scret 5,  other 3  (predict for XP_009148597.1)
scret 5,  other 3  (predict for XP_018515268.1)
other 4,  chlo 4  (predict for XP_033129771.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103872007
bra-r.6
for
103837662
bra-r.6
for
103832953
bra-r.6
for
103832630
ath-u.5
for
CRK8
ghi-r.1
for
121203494
ghi-r.1
for
121205006
cit-r.1
for
102626317
vvi-u.5
for
109122214
zma-u.5
for
103635502
zma-u.5
for
103642667
zma-u.5
for
103644180
tae-r.2
for
123113213
bdi-r.1
for
106866887
cre-r.1
for
CHLRE_16g660331v5
cre-r.1
for
CHLRE_03g183950v5
cre-r.1
for
CHLRE_03g186800v5


Ortholog ID: 7
Species bra bna ath ghi zma zma bdi cre cre cre
Symbol LOC103872007 LOC125581568 CRK8 LOC121205006 LOC103644180 LOC100282400 LOC100822297 CHLRE_03g183950v5 CHLRE_03g186800v5 CHLRE_01g045850v5
Function* general transcription and DNA repair factor IIH subunit TFB5 uncharacterized mitochondrial protein AtMg00810-like cysteine-rich RECEPTOR-like kinase uncharacterized LOC121205006 bZIP transcription factor RISBZ2 uncharacterized LOC100282400 retrovirus-related Pol polyprotein from transposon TNT 1-94 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 2
bra00190 Oxidative phosphorylation 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03250 Viral life cycle - HIV-1 2
ghi04075 Plant hormone signal transduction 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00260 Glycine, serine and threonine metabolism 2
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103872007 125581568 828415 121205006 103644180 100282400 100822297 66052911 66052920 5728562
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