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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106346910   2-isopropylmalate synthase 1, chloroplastic-like 
 ath-u.5   MAML-4   methylthioalkylmalate synthase-like 4 
 ath-u.5   IMS1   2-isopropylmalate synthase 1 
 gma-u.5   100788955   2-isopropylmalate synthase 2, chloroplastic 
 gma-u.5   100812918   2-isopropylmalate synthase 2, chloroplastic 
 vvi-u.5   100249820   2-isopropylmalate synthase A 
 ppo-u.5   7486329   2-isopropylmalate synthase 1, chloroplastic 
 mtr-u.5   25497889   probable 2-isopropylmalate synthase 
 mtr-u.5   11445801   2-isopropylmalate synthase 2, chloroplastic 
 sly-u.5   101245066   2-isopropylmalate synthase B 
 sly-u.5   IPMS2   isopropylmalate synthase 
 osa-u.5   4351460   2-isopropylmalate synthase A 
 osa-u.5   4349745   2-isopropylmalate synthase A 
 zma-u.5   100280189   uncharacterized LOC100280189 
 zma-u.5   100280499   2-isopropylmalate synthase B 
 zma-u.5   100281571   uncharacterized LOC100281571 

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Top 50 coexpressed genes to 106346910 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106346910 (bna-r.1 coexpression data)

CoexMap"106346910"


bnaLOC106346910 | Entrez gene ID : 106346910    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 2 2 1 1 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna00290 [list] [network] Valine, leucine and isoleucine biosynthesis (77 genes)
bna00620 [list] [network] Pyruvate metabolism (300 genes)
bna01210 [list] [network] 2-Oxocarboxylic acid metabolism (324 genes)
bna01230 [list] [network] Biosynthesis of amino acids (773 genes)
GO BP
GO:0009098 [list] [network] L-leucine biosynthetic process  (31 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (1821 genes)  IEA  
GO MF
GO:0003852 [list] [network] 2-isopropylmalate synthase activity  (20 genes)  IEA  
Protein XP_013641826.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1,  mito 1,  pero 1,  cyto_pero 1  (predict for XP_013641826.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_013641826.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106346910
ath-u.5
for
MAML-4
ath-u.5
for
IMS1
gma-u.5
for
100788955
gma-u.5
for
100812918
vvi-u.5
for
100249820
ppo-u.5
for
7486329
mtr-u.5
for
25497889
mtr-u.5
for
11445801
sly-u.5
for
101245066
sly-u.5
for
IPMS2
osa-u.5
for
4351460
osa-u.5
for
4349745
zma-u.5
for
100280189
zma-u.5
for
100280499
zma-u.5
for
100281571


Ortholog ID: 3861
Species bna bna bra bra ath ath ghi ghi cit gma gma vvi ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu sbi sbi bdi cre
Symbol LOC106427153 LOC106369058 LOC103872613 LOC103842698 MAML-4 IMS1 LOC107903771 LOC107910176 LOC102620455 LOC100812918 LOC100788955 LOC100249820 LOC7486329 LOC25497889 LOC11445801 IPMS2 LOC101245066 LOC102593340 LOC102593662 LOC107760648 LOC107822963 LOC4349745 LOC4351460 LOC100280189 LOC100280499 LOC123103026 LOC123111229 LOC123452967 LOC8085635 LOC8071409 LOC100832390 CHLRE_06g258733v5
Function* 2-isopropylmalate synthase 1, chloroplastic 2-isopropylmalate synthase 1, chloroplastic 2-isopropylmalate synthase 1, chloroplastic 2-isopropylmalate synthase 1, chloroplastic methylthioalkylmalate synthase-like 4 2-isopropylmalate synthase 1 2-isopropylmalate synthase 2, chloroplastic 2-isopropylmalate synthase 2, chloroplastic 2-isopropylmalate synthase 1, chloroplastic-like 2-isopropylmalate synthase 2, chloroplastic 2-isopropylmalate synthase 2, chloroplastic 2-isopropylmalate synthase A 2-isopropylmalate synthase 1, chloroplastic probable 2-isopropylmalate synthase 2-isopropylmalate synthase 2, chloroplastic isopropylmalate synthase 2-isopropylmalate synthase B 2-isopropylmalate synthase A-like 2-isopropylmalate synthase A-like 2-isopropylmalate synthase B 2-isopropylmalate synthase A 2-isopropylmalate synthase A 2-isopropylmalate synthase A uncharacterized LOC100280189 2-isopropylmalate synthase B 2-isopropylmalate synthase A 2-isopropylmalate synthase A 2-isopropylmalate synthase A-like 2-isopropylmalate synthase A 2-isopropylmalate synthase A 2-isopropylmalate synthase A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00620 Pyruvate metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00290 Valine, leucine and isoleucine biosynthesis 4
bna00620 Pyruvate metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 14
ath01210 2-Oxocarboxylic acid metabolism 10
ath00290 Valine, leucine and isoleucine biosynthesis 6
ath00660 C5-Branched dibasic acid metabolism 3
ath00300 Lysine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01210 2-Oxocarboxylic acid metabolism 4
ath01230 Biosynthesis of amino acids 4
ath00290 Valine, leucine and isoleucine biosynthesis 3
ath00970 Aminoacyl-tRNA biosynthesis 2
ath00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 13
ghi00290 Valine, leucine and isoleucine biosynthesis 11
ghi01210 2-Oxocarboxylic acid metabolism 11
ghi00770 Pantothenate and CoA biosynthesis 7
ghi00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 11
ghi00290 Valine, leucine and isoleucine biosynthesis 9
ghi01210 2-Oxocarboxylic acid metabolism 9
ghi00770 Pantothenate and CoA biosynthesis 5
ghi00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma01210 2-Oxocarboxylic acid metabolism 6
gma01230 Biosynthesis of amino acids 6
gma00290 Valine, leucine and isoleucine biosynthesis 5
gma00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01210 2-Oxocarboxylic acid metabolism 10
gma01230 Biosynthesis of amino acids 10
gma00290 Valine, leucine and isoleucine biosynthesis 7
gma00270 Cysteine and methionine metabolism 4
gma00920 Sulfur metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 7
ppo00290 Valine, leucine and isoleucine biosynthesis 5
ppo01210 2-Oxocarboxylic acid metabolism 5
ppo00770 Pantothenate and CoA biosynthesis 4
ppo00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 4
mtr03010 Ribosome 3
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 3
sly00310 Lysine degradation 2
sly01240 Biosynthesis of cofactors 2
sly00620 Pyruvate metabolism 2
sly01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
sly01210 2-Oxocarboxylic acid metabolism 3
sly01230 Biosynthesis of amino acids 3
sly00290 Valine, leucine and isoleucine biosynthesis 2
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00290 Valine, leucine and isoleucine biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot01230 Biosynthesis of amino acids 4
sot00620 Pyruvate metabolism 3
sot00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00290 Valine, leucine and isoleucine biosynthesis 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot01230 Biosynthesis of amino acids 4
sot00620 Pyruvate metabolism 3
sot00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 13
nta00270 Cysteine and methionine metabolism 6
nta00290 Valine, leucine and isoleucine biosynthesis 4
nta01210 2-Oxocarboxylic acid metabolism 4
nta00260 Glycine, serine and threonine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 5
nta00290 Valine, leucine and isoleucine biosynthesis 2
nta00620 Pyruvate metabolism 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 9
osa01230 Biosynthesis of amino acids 4
osa03013 Nucleocytoplasmic transport 2
osa03040 Spliceosome 2
osa00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
osa01230 Biosynthesis of amino acids 5
osa01210 2-Oxocarboxylic acid metabolism 3
osa01200 Carbon metabolism 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
zma00290 Valine, leucine and isoleucine biosynthesis 4
zma01210 2-Oxocarboxylic acid metabolism 4
zma01230 Biosynthesis of amino acids 4
zma00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00280 Valine, leucine and isoleucine degradation 10
zma01210 2-Oxocarboxylic acid metabolism 5
zma00640 Propanoate metabolism 3
zma01200 Carbon metabolism 3
zma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 11
tae00290 Valine, leucine and isoleucine biosynthesis 8
tae01210 2-Oxocarboxylic acid metabolism 8
tae00660 C5-Branched dibasic acid metabolism 5
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 10
tae00290 Valine, leucine and isoleucine biosynthesis 9
tae01210 2-Oxocarboxylic acid metabolism 9
tae00970 Aminoacyl-tRNA biosynthesis 7
tae00660 C5-Branched dibasic acid metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 6
hvu00220 Arginine biosynthesis 4
hvu00250 Alanine, aspartate and glutamate metabolism 3
hvu01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00290 Valine, leucine and isoleucine biosynthesis 2
sbi00620 Pyruvate metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi01230 Biosynthesis of amino acids 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00290 Valine, leucine and isoleucine biosynthesis 2
sbi00620 Pyruvate metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi01230 Biosynthesis of amino acids 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 4
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi00290 Valine, leucine and isoleucine biosynthesis 2
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 6
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
cre00970 Aminoacyl-tRNA biosynthesis 4
cre00350 Tyrosine metabolism 2
cre00360 Phenylalanine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106427153 106369058 103872613 103842698 838431 843742 107903771 107910176 102620455 100812918 100788955 100249820 7486329 25497889 11445801 101251907 101245066 102593340 102593662 107760648 107822963 4349745 4351460 100280189 100280499 123103026 123111229 123452967 8085635 8071409 100832390 5722076
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