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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106352793   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 ath-u.5   ARP   apurinic endonuclease-redox protein 
 gma-u.5   100776653   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 vvi-u.5   100257338   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 ppo-u.5   7458951   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 mtr-u.5   25483315   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 sly-u.5   101255875   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 osa-u.5   4327961   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 osa-u.5   4327960   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 zma-u.5   100191243   uncharacterized LOC100191243 
 zma-u.5   100280514   uncharacterized LOC100280514 

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Top 50 coexpressed genes to 106352793 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106352793 (bna-r.1 coexpression data)

CoexMap"106352793"


bnaLOC106352793 | Entrez gene ID : 106352793    
Species bna ath gma vvi ppo mtr sly osa zma hvu cit bra ghi sbi bdi nta tae cre sot
Paralog 1 1 1 1 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03410 [list] [network] Base excision repair (126 genes)
GO BP
GO:0006284 [list] [network] base-excision repair  (68 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0008311 [list] [network] double-stranded DNA 3'-5' DNA exonuclease activity  (9 genes)  IEA  
GO:0003906 [list] [network] DNA-(apurinic or apyrimidinic site) endonuclease activity  (15 genes)  IEA  
GO:0008081 [list] [network] phosphoric diester hydrolase activity  (169 genes)  IEA  
GO:0004519 [list] [network] endonuclease activity  (1036 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_013647878.1 [sequence] [blastp]
XP_048608620.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  pero 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_013647878.1)
cyto 4,  nucl 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_048608620.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013647878.1)
other 9  (predict for XP_048608620.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106352793
ath-u.5
for
ARP
gma-u.5
for
100776653
vvi-u.5
for
100257338
ppo-u.5
for
7458951
mtr-u.5
for
25483315
sly-u.5
for
101255875
osa-u.5
for
4327961
osa-u.5
for
4327960
zma-u.5
for
100191243
zma-u.5
for
100280514


Ortholog ID: 5487
Species bna bra bra ath ghi ghi cit gma vvi ppo mtr sly sot nta nta osa osa zma tae tae hvu hvu sbi bdi bdi cre
Symbol LOC106437988 LOC103860053 LOC103866025 ARP LOC107950700 LOC107951865 LOC102617923 LOC100776653 LOC100257338 LOC7458951 LOC25483315 LOC101255875 LOC102598756 LOC107801612 LOC107777923 LOC4327960 LOC4327961 LOC100191243 LOC123079450 LOC123079451 LOC123444621 LOC123440381 LOC8055254 LOC100838455 LOC100837972 CHLRE_03g175850v5
Function* DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) lyase, chloroplastic DNA-(apurinic or apyrimidinic site) lyase, chloroplastic apurinic endonuclease-redox protein DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) lyase, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic uncharacterized LOC100191243 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) lyase, chloroplastic DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like DNA-(apurinic or apyrimidinic site) lyase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 7
ath03030 DNA replication 6
ath03420 Nucleotide excision repair 6
ath03430 Mismatch repair 6
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00760 Nicotinate and nicotinamide metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03015 mRNA surveillance pathway 3
gma00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
vvi04136 Autophagy - other 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 3
nta03410 Base excision repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 2
cre03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106437988 103860053 103866025 818744 107950700 107951865 102617923 100776653 100257338 7458951 25483315 101255875 102598756 107801612 107777923 4327960 4327961 100191243 123079450 123079451 123444621 123440381 8055254 100838455 100837972 5728858
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