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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106352977   ribosome production factor 2 homolog 
 ath-u.5   AT3G23620   Ribosomal RNA processing Brix domain protein 
 gma-u.5   100814010   ribosome production factor 2 homolog 
 gma-u.5   100781114   ribosome production factor 2 homolog 
 vvi-u.5   100252891   ribosome production factor 2 homolog 
 ppo-u.5   7463084   ribosome production factor 2 homolog 
 mtr-u.5   25483892   ribosome production factor 2 homolog 
 sly-u.5   101263361   ribosome production factor 2 homolog 
 osa-u.5   4323989   ribosome production factor 2 homolog 
 zma-u.5   100282857   uncharacterized LOC100282857 
 zma-u.5   100381340   uncharacterized LOC100381340 

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Top 50 coexpressed genes to 106352977 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106352977 (bna-r.1 coexpression data)

CoexMap"106352977"


bnaLOC106352977 | Entrez gene ID : 106352977    
Species bna ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta
Paralog 1 1 2 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (66 genes)  IEA  
GO:0000027 [list] [network] ribosomal large subunit assembly  (108 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (615 genes)  IEA  
GO MF
GO:0019843 [list] [network] rRNA binding  (248 genes)  IEA  
Protein XP_013648092.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 1,  mito 1,  cysk 1,  golg_plas 1  (predict for XP_013648092.1)
Subcellular
localization
TargetP
other 7  (predict for XP_013648092.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106352977

.
ath-u.5
for
AT3G23620

.
gma-u.5
for
100814010

.
gma-u.5
for
100781114

.
vvi-u.5
for
100252891

.
ppo-u.5
for
7463084

.
mtr-u.5
for
25483892

.
sly-u.5
for
101263361

.
osa-u.5
for
4323989

.
zma-u.5
for
100282857

.
zma-u.5
for
100381340

.


Ortholog ID: 5759
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta
Symbol AT3G23620 LOC100781114 LOC100814010 LOC101263361 LOC4323989 LOC100381340 LOC100282857 LOC103832323 LOC103828722 LOC100252891 LOC7463084 LOC25483892 LOC123111959 LOC123117083 LOC123397089 LOC107905359 LOC107942119 LOC106352977 LOC106357866 CHLRE_03g197000v5 LOC8080081 LOC102597675 LOC102617096 LOC100832812 LOC100843754 LOC142178421
Function* Ribosomal RNA processing Brix domain protein ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog uncharacterized LOC100381340 uncharacterized LOC100282857 ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog uncharacterized protein ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog ribosome production factor 2 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 6
bdi03010 Ribosome 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03022 Basal transcription factors 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821942 100781114 100814010 101263361 4323989 100381340 100282857 103832323 103828722 100252891 7463084 25483892 123111959 123117083 123397089 107905359 107942119 106352977 106357866 5718772 8080081 102597675 102617096 100832812 100843754 142178421
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