ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106360694	RGG repeats nuclear RNA binding protein A
ath-u.5	AT4G16830	Hyaluronan / mRNA binding family
ath-u.5	AT4G17520	Hyaluronan / mRNA binding family
ath-u.5	AT5G47210	Hyaluronan / mRNA binding family
gma-u.5	100805110	RGG repeats nuclear RNA binding protein A
gma-u.5	100807657	uncharacterized LOC100807657
gma-u.5	100814825	RGG repeats nuclear RNA binding protein A
vvi-u.5	100265608	RGG repeats nuclear RNA binding protein A
vvi-u.5	100259885	RGG repeats nuclear RNA binding protein A
ppo-u.5	18094574	RGG repeats nuclear RNA binding protein A
ppo-u.5	18105076	RGG repeats nuclear RNA binding protein A
ppo-u.5	7461996	RGG repeats nuclear RNA binding protein A
mtr-u.5	11438402	RGG repeats nuclear RNA binding protein A
mtr-u.5	25500060	RGG repeats nuclear RNA binding protein A
sly-u.5	101255921	plasminogen activator inhibitor 1 RNA-binding protein-like
sly-u.5	101256310	RGG repeats nuclear RNA binding protein A
sly-u.5	101260416	RGG repeats nuclear RNA binding protein A-like
osa-u.5	4339782	RGG repeats nuclear RNA binding protein A
osa-u.5	4339423	RGG repeats nuclear RNA binding protein A
osa-u.5	4324661	RGG repeats nuclear RNA binding protein A
zma-u.5	103651256	RGG repeats nuclear RNA binding protein C
zma-u.5	100282553	RGG repeats nuclear RNA binding protein
zma-u.5	100282188	RGG repeats nuclear RNA binding protein

Top 50 coexpressed genes to 106360694 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106360694 (bna-r.1 coexpression data)

CoexMap"106360694"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus	(9971 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(16489 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(3852 genes)

IEA

Protein

XP_013655783.2 [sequence] [blastp]
XP_013655784.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_013655783.2)
chlo 1, nucl 1, cyto 1, plas 1, extr 1, vacu 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1	(predict for XP_013655784.2)

Subcellular
localization
TargetP

other 6, chlo 6	(predict for XP_013655783.2)
scret 8	(predict for XP_013655784.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106360694	ath-u.5 for AT4G16830	ath-u.5 for AT4G17520	ath-u.5 for AT5G47210	gma-u.5 for 100805110	gma-u.5 for 100807657	gma-u.5 for 100814825	vvi-u.5 for 100265608	vvi-u.5 for 100259885	ppo-u.5 for 18094574	ppo-u.5 for 18105076	ppo-u.5 for 7461996	mtr-u.5 for 11438402	mtr-u.5 for 25500060	sly-u.5 for 101255921	sly-u.5 for 101256310	sly-u.5 for 101260416	osa-u.5 for 4339782	osa-u.5 for 4339423	osa-u.5 for 4324661	zma-u.5 for 103651256	zma-u.5 for 100282553	zma-u.5 for 100282188

Ortholog

Ortholog ID: 995

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

RGGA

Function^*

RGG repeats nuclear RNA binding protein A-like

RGG repeats nuclear RNA binding protein C-like

RGG repeats nuclear RNA binding protein C

RGG repeats nuclear RNA binding protein B

Hyaluronan / mRNA binding family