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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106376377   small nuclear ribonucleoprotein Sm D2 
 bna-r.1   106444889   small nuclear ribonucleoprotein Sm D2 
 bna-r.1   106435244   small nuclear ribonucleoprotein Sm D2-like 
 bna-r.1   106353323   small nuclear ribonucleoprotein Sm D2-like 
 bra-r.6   103842086   small nuclear ribonucleoprotein Sm D2 
 bra-r.6   103862772   small nuclear ribonucleoprotein Sm D2 
 bra-r.6   103830369   small nuclear ribonucleoprotein Sm D2 
 ath-u.5   AT2G47640   Small nuclear ribonucleoprotein family protein 
 ath-u.5   AT3G62840   Small nuclear ribonucleoprotein family protein 
 ghi-r.1   107957208   small nuclear ribonucleoprotein Sm D2 
 ghi-r.1   107918638   small nuclear ribonucleoprotein Sm D2 
 ghi-r.1   107903911   small nuclear ribonucleoprotein Sm D2 
 cit-r.1   102610531   uncharacterized LOC102610531 
 cit-r.1   102629583   uncharacterized LOC102629583 
 gma-u.5   100500203   putative small nuclear ribonucleoprotein Sm D2 
 gma-u.5   100792526   small nuclear ribonucleoprotein Sm D2 
 gma-u.5   100793233   probable small nuclear ribonucleoprotein Sm D2-like 
 vvi-u.5   100258827   uncharacterized LOC100258827 
 ppo-u.5   7478843   uncharacterized LOC7478843 
 ppo-u.5   7491301   uncharacterized LOC7491301 
 mtr-u.5   11426500   small nuclear ribonucleoprotein Sm D2 
 mtr-u.5   11425290   small nuclear ribonucleoprotein Sm D2 
 sly-u.5   101246377   uncharacterized LOC101246377 
 sot-r.1   102591954   small nuclear ribonucleoprotein Sm D2 
 nta-r.1   107815122   uncharacterized LOC107815122 
 nta-r.1   107781770   uncharacterized LOC107781770 
 nta-r.1   107831108   uncharacterized LOC107831108 
 osa-u.5   4338385   uncharacterized LOC4338385 
 zma-u.5   100193568   uncharacterized LOC100193568 
 zma-u.5   100280773   uncharacterized LOC100280773 
 zma-u.5   100193106   uncharacterized LOC100193106 
 tae-r.2   123080932   small nuclear ribonucleoprotein Sm D2 
 tae-r.2   123099084   small nuclear ribonucleoprotein Sm D2 
 tae-r.2   123093863   small nuclear ribonucleoprotein Sm D2 
 hvu-r.1   123449942   small nuclear ribonucleoprotein Sm D2-like 
 hvu-r.1   123441091   small nuclear ribonucleoprotein Sm D2-like 
 sbi-r.1   8054285   small nuclear ribonucleoprotein Sm D2 
 sbi-r.1   8068671   small nuclear ribonucleoprotein Sm D2 
 bdi-r.1   100831115   small nuclear ribonucleoprotein Sm D2 
 cre-r.1   CHLRE_10g453450v5   uncharacterized protein 

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Top 50 coexpressed genes to 106376377 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106376377 (bna-r.1 coexpression data)

CoexMap"106376377"


bnaLOC106376377 | Entrez gene ID : 106376377    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 2 3 1 2 2 1 1 3 1 3 3 2 2 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (90 genes)  IEA  
GO:0008380 [list] [network] RNA splicing  (629 genes)  IEA  
GO CC
GO:0005682 [list] [network] U5 snRNP  (56 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (91 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (102 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (154 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (222 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_013671901.1 [sequence] [blastp]
XP_013671902.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  extr 2,  chlo 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_013671901.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for XP_013671902.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013671901.1)
other 8  (predict for XP_013671902.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106376377
bna-r.1
for
106444889
bna-r.1
for
106435244
bna-r.1
for
106353323
bra-r.6
for
103842086
bra-r.6
for
103862772
bra-r.6
for
103830369
ath-u.5
for
AT2G47640
ath-u.5
for
AT3G62840
ghi-r.1
for
107957208
ghi-r.1
for
107918638
ghi-r.1
for
107903911
cit-r.1
for
102610531
cit-r.1
for
102629583
gma-u.5
for
100500203
gma-u.5
for
100792526
gma-u.5
for
100793233
vvi-u.5
for
100258827
ppo-u.5
for
7478843
ppo-u.5
for
7491301
mtr-u.5
for
11426500
mtr-u.5
for
11425290
sly-u.5
for
101246377
sot-r.1
for
102591954
nta-r.1
for
107815122
nta-r.1
for
107781770
nta-r.1
for
107831108
osa-u.5
for
4338385
zma-u.5
for
100193568
zma-u.5
for
100280773
zma-u.5
for
100193106
tae-r.2
for
123080932
tae-r.2
for
123099084
tae-r.2
for
123093863
hvu-r.1
for
123449942
hvu-r.1
for
123441091
sbi-r.1
for
8054285
sbi-r.1
for
8068671
bdi-r.1
for
100831115
cre-r.1
for
CHLRE_10g453450v5


Ortholog ID: 3790
Species bna bna bna bra bra bra ath ath ghi ghi ghi cit cit gma gma gma vvi ppo ppo mtr mtr sly sot nta nta nta osa zma zma zma tae tae tae hvu hvu sbi sbi bdi cre
Symbol LOC106444889 LOC106406408 LOC106420510 LOC103842086 LOC103862772 LOC103830369 AT2G47640 AT3G62840 LOC107918638 LOC107903911 LOC107913510 LOC102610531 LOC102629583 LOC100500203 LOC100792526 LOC100793233 LOC100258827 LOC7478843 LOC7491301 LOC11426500 LOC11425290 LOC101246377 LOC102591954 LOC107815122 LOC107781770 LOC107831108 LOC4338385 LOC100193568 LOC100280773 LOC100193106 LOC123099084 LOC123093863 LOC123063612 LOC123449942 LOC123441091 LOC8054285 LOC8068671 LOC100831115 CHLRE_10g453450v5
Function* small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 uncharacterized LOC102610531 uncharacterized LOC102629583 putative small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 probable small nuclear ribonucleoprotein Sm D2-like uncharacterized LOC100258827 uncharacterized LOC7478843 uncharacterized LOC7491301 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 uncharacterized LOC101246377 small nuclear ribonucleoprotein Sm D2 uncharacterized LOC107815122 uncharacterized LOC107781770 uncharacterized LOC107831108 uncharacterized LOC4338385 uncharacterized LOC100193568 uncharacterized LOC100280773 uncharacterized LOC100193106 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2-like small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 small nuclear ribonucleoprotein Sm D2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 6
bra03040 Spliceosome 4
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
bra03040 Spliceosome 3
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03040 Spliceosome 3
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 11
ath03020 RNA polymerase 4
ath03420 Nucleotide excision repair 4
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 7
ath03040 Spliceosome 4
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 3
cit03010 Ribosome 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03040 Spliceosome 5
gma03008 Ribosome biogenesis in eukaryotes 3
gma03018 RNA degradation 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03040 Spliceosome 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03010 Ribosome 6
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
nta03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 10
nta03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03010 Ribosome 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 8
zma03010 Ribosome 7
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 3
tae03030 DNA replication 2
tae03410 Base excision repair 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
hvu03040 Spliceosome 4
hvu03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi03040 Spliceosome 3
sbi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
sbi03020 RNA polymerase 3
sbi03420 Nucleotide excision repair 3
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
bdi03010 Ribosome 6
bdi03420 Nucleotide excision repair 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 17
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106444889 106406408 106420510 103842086 103862772 103830369 819377 825459 107918638 107903911 107913510 102610531 102629583 100500203 100792526 100793233 100258827 7478843 7491301 11426500 11425290 101246377 102591954 107815122 107781770 107831108 4338385 100193568 100280773 100193106 123099084 123093863 123063612 123449942 123441091 8054285 8068671 100831115 5724086
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